Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00237 ATGTCTTGGTCGCATTCACCTTCAAAGTCTCAAGTTAAGAGTCCTCAGAAATCTCCTATAATTCCCCCAAACTGTCCTCCGAATCTTGTTAAACAAATGGAGCAAAGTATATGCTACAATTGTCGCCAAAGTGGACACTGGTCTTGGTACTGTCCCTCCAAATCCCCCAATCTAAATCGCGTTTCACCCTCTCCCAATCAGGGTTCCCCAGTTTCTTCCAACACTATACAGTGCCGTTGTGGCCATGGCCCCTGCGAAATCAAACCCGCACGTTGTGGAAGGAACTTCTATGCCTGCCCCATAAAAAATGGGGTAAAATGTACGAATTTTGTAAAGTGGTGCGATGATCCTGTTTCTGAGTTAGATTTGCAGCCTCCACTGATCAAGTATCCTGAGTGTGCATGTAAGGCTGGAGTGTGTAGAAGGGTTAAGGGTACAGAGGTAGATGGTGCTTTTAAGTACTATTTTACTTGCCCTATTAAAGAGGGTCATGGATCTTGTGGATATCGTGTGTGGGAGGATGAAATTAAATTGCTTGACAGCAAAAGCATTGTTCCTACCCAGCAAAGCAGGCAAATGACTCTTCATGAGTTTTGGGAGGGATGCAAAAAAGATGATGAGCTGGGTAGTGAACTCAGTAAAAGGAGGAGAACTACGGTCTCTTCTGAGGATCCCTCGGCTGTGCTCGAGATTCCAGACAAAGAAGATGCAGGTGCAGCATTAACTGTAGCAAATTCGAAACGCGATGATTTTCCAGATTTGGTGGTTGATGATGCTGATTTCGAGCTTACAAATTCGGTATCATGTGAGACTAATAAGGCAGATGCAGTTCTCTCATTATCTCGTCTATCAACACCTTTAAGGATCCGTTGGCGACAAATTATGTTTGAGAGGCGCATTTTCTCTGATTCTTCATTGGGCATTTTCCCATCCTATAATCCAATCATTGTCGGTAAACAGACGAATGTTCCTGATGGTCCTTGCAACAAGCTTGCTATCAAAAGTGTTGGTCATCAACATACCCAACTTTCAACTGGTTGCCGTACTGACGTTTCAGGACATGTTGCTAGTTCCAGTAAACTACAAGATGGTGAACGAAAGTCAAAGGCATCAAGCCATAGAGAAGTGATTTTGTTTACACAGCAACGACTTCTTCTTGATGCTCTAGAGACCTTGGCTCCTCATGAGCATGAGTCCATGAAAGAGGCAGCAGAGACCACTTTTGAAATATTAAATGTTTTAGGGATTGACTATAAACAGTTTTCTGATCATGTCTTGGACTATATAAATTTTGCATCATCATTTGCAGAAATAGATAAATCCATGGAAAATTCCCTTACTATGGAGGATCTCATCAAACTCTTTGAGGAGGAGAAAAGGAGGTTTGCTCAACTCCAACACGAACATGTCAAGACCAAAGCTTTGCTTGAAACATCAAAACGGCATAGGCAGTTGCTTTGTGAACAGGTCTCTAATCTGAAGGCCATGCTTAATGAAAAACAAAATCAATTAAAATTTTGTGAGTTGGAGACCTTGAAGGTAGAAACTTGCCTTGGTGATTTGGAAAGGACTATATTGGAGACTGATATAAAGCTGAAGGAAAGAGCTGAGCAAGTAGAAGTGTCAAGAAAACAAAGTGAGGAAAGACAAGCAATGCAAATTGCAACTCAGGAAGCACTGCATAAGGCAAAACTTGATTTGGAAAATTGA 1710 0.4187 MSWSHSPSKSQVKSPQKSPIIPPNCPPNLVKQMEQSICYNCRQSGHWSWYCPSKSPNLNRVSPSPNQGSPVSSNTIQCRCGHGPCEIKPARCGRNFYACPIKNGVKCTNFVKWCDDPVSELDLQPPLIKYPECACKAGVCRRVKGTEVDGAFKYYFTCPIKEGHGSCGYRVWEDEIKLLDSKSIVPTQQSRQMTLHEFWEGCKKDDELGSELSKRRRTTVSSEDPSAVLEIPDKEDAGAALTVANSKRDDFPDLVVDDADFELTNSVSCETNKADAVLSLSRLSTPLRIRWRQIMFERRIFSDSSLGIFPSYNPIIVGKQTNVPDGPCNKLAIKSVGHQHTQLSTGCRTDVSGHVASSSKLQDGERKSKASSHREVILFTQQRLLLDALETLAPHEHESMKEAAETTFEILNVLGIDYKQFSDHVLDYINFASSFAEIDKSMENSLTMEDLIKLFEEEKRRFAQLQHEHVKTKALLETSKRHRQLLCEQVSNLKAMLNEKQNQLKFCELETLKVETCLGDLERTILETDIKLKERAEQVEVSRKQSEERQAMQIATQEALHKAKLDLEN 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00237 569 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Spst1g00237 569 Coils Coil 553 569 - -
Spst1g00237 569 PANTHER OS07G0190500 PROTEIN 126 522 - -
Spst1g00237 569 SUPERFAMILY Retrovirus zinc finger-like domains 32 60 IPR036875 GO:0003676|GO:0008270
Spst1g00237 569 Gene3D - 31 61 - -
Spst1g00237 569 ProSiteProfiles Zinc finger CCHC-type profile. 38 53 IPR001878 GO:0003676|GO:0008270
Spst1g00237 569 SMART c2hcfinal6 37 53 IPR001878 GO:0003676|GO:0008270
Spst1g00237 569 Coils Coil 448 468 - -
Spst1g00237 569 MobiDBLite consensus disorder prediction 344 369 - -
Spst1g00237 569 MobiDBLite consensus disorder prediction 1 18 - -
Spst1g00237 569 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g00237 569 MobiDBLite consensus disorder prediction 344 359 - -
Spst1g00237 569 Coils Coil 483 510 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00237 - - vra:106766599 768.459