Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01451 ATGGAGTTCCTCTTCCTTCTGTACCTCGCCCCAACGTTGTACGCGTGTTTCCTCATCTGGAAAATGTTGGACGAGAGACGAGACAGGGAGTGTTACATCCTCGACTATCAGTGCTACAAGCCCTCCAACGACCGAATGCTGGGCACCGAGTTCTGCGGGAAACTCATCAAACGCAGCCAAAACTTGGGTCCCAGCGAGTACCGTTTTCTCCTGAAGGCCATTGTCAGCTCCGGCATCGGCGAACAAACTTACGCGCCAAGAAACATCTTCGAGGGTCGCGAGGGAACTCCCACATTGCTCGACGGCATTGGAGAGATGGAAGAGTTTTTCAACGACGCCATCGCCAAGCTCCTCGCCAAATCAAAAGTCTCCCCCTCCGAGATCGACGTCCTCGTCGTCAACATCTCCATGCTCGCCGCCGTTCCCTCCCTCTCCTCACGCATCATCAACCGCTACAAGCTCCGCCACGACATCAAGGTCTACAACCTCACCGGCATGGGTTGCAGCGCCAGCCTCATCTCTATGGACATCGTCAAAAACATCTTCAAGACTCAGAGGAACAAGCTCGCGTTGTTGATCACCTCCGAGTCCCTCAGCCCCAACTGGTACACCGGGAACGACAGATCCATGATCCTCGCCAACTGCTTGTTCCGCTCTGGCGGCTGCGCGATTCTCTTGACCAACAAACGGTCCTTGAAGGACAGAGCCATGCTGCGGTTGAAGTGCCTGGTGAGGACGCACCACGGAGCCAGAGAAGAGGCTTATGGTTGTTGTATTCAGCAGGAAGACGATCAGGGGAGGCTCGGGTTTCACCTTGGAAAGACGCTTCCCAAAGCCGCCACCCGAGCCTTCGTTGATAATCTTCGAGTCATAGCACCCAAGATATTACCCATCCGTGAGTTGCTCAGGTTTTTGTTCGTGTCCCTAGTTAAAAAACTGAACAAAAACAACACTCCCAAGTCTGCGAGCACTGGAGCTACTAAATCTCCATTGAACTTCAGAACAGGGGTGGATCATTTTTGTTTGCATACTGGAGGAAAAGCTGTGATCGACGGCATTGGCATGAGCTTGGATCTGAGCGAGTACGACCTAGAGCCGGCGAGGATGACCCTGCACCGGTTCGGGAACACGTCAGCGAGTAGCTTGTGGTACGTGTTATCGTACATGGAAGCGAAGAAGAGGTTGAAGAAGGGTGATACGGTGTTCATGATAAGCTTTGGTGCTGGCTTTAAATGTAACAGCTGTTTGTGGGAGGTGATGAAGGACTTGGGAGACCCAAATGTGTGGGACGATTGCATTGATGACTACCCACCGGAGTCATTGGACAACCCCTTCATGAAGACCTATGGTTGGATCAACGAGGTTGAGGACCCGTACACTTACGAACATATTCCCGATTTTCTCAAGTGA 1410 0.5241 MEFLFLLYLAPTLYACFLIWKMLDERRDRECYILDYQCYKPSNDRMLGTEFCGKLIKRSQNLGPSEYRFLLKAIVSSGIGEQTYAPRNIFEGREGTPTLLDGIGEMEEFFNDAIAKLLAKSKVSPSEIDVLVVNISMLAAVPSLSSRIINRYKLRHDIKVYNLTGMGCSASLISMDIVKNIFKTQRNKLALLITSESLSPNWYTGNDRSMILANCLFRSGGCAILLTNKRSLKDRAMLRLKCLVRTHHGAREEAYGCCIQQEDDQGRLGFHLGKTLPKAATRAFVDNLRVIAPKILPIRELLRFLFVSLVKKLNKNNTPKSASTGATKSPLNFRTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLSYMEAKKRLKKGDTVFMISFGAGFKCNSCLWEVMKDLGDPNVWDDCIDDYPPESLDNPFMKTYGWINEVEDPYTYEHIPDFLK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01451 469 CDD CHS_like 19 417 - -
Spst11g01451 469 Gene3D - 81 419 IPR016039 GO:0016746
Spst11g01451 469 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Spst11g01451 469 SUPERFAMILY Thiolase-like 26 420 IPR016039 GO:0016746
Spst11g01451 469 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 418 IPR013747 -
Spst11g01451 469 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 451 IPR012392 GO:0006633|GO:0016020|GO:0016747
Spst11g01451 469 PANTHER 3-KETOACYL-COA SYNTHASE 17 438 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01451 Spst-Chr11 38973953 38975362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01451 19 466 Acyl Lipid Metabolism Gene Families AT2G28630 69.365 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01451 K15397 - gmx:100810048 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00607 5 5186040 5187458 Spst11g01451 11 38973953 38975362 PCT