Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01417 ATGGAGAACCTTTTCCCCCAAAGAATTTGCCAGGAGCTAAAGCTCAAAACGATAATGGCAAAATGCAGAATCAGTGAAGCAGTGCATGTTGCCTTGCTTGGACTGCAAGATGCAGGAGCAGTTGCTAGTTCTTCTGCTGCAAAGATCTATGGCTTGAATATTCTTGCTGAAGACATTCAGGATGATAGTGATAATGTCACCAGATTTTTAATGTTAGCACGAGAACCTATAATTCCAGGCACTGACAGGCCATTTAAGACAAGCGTAGTTTTTTCTTTAGAAGAGGGTCCTGGTATTCTTTTCAAGGCCCTTGCTGTTTTTGCTTTGCGTCAGATTAACCTTACAAAGATTGAAAGCCGTCCTTTGCGAAACCAACCTCTACGAGCTGATGATAACAACAATTCCAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCATCAATGGCTGATCAAAATGCACAAAATGCCCTAAGGCATCTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGCTATCCAGTGGACACTACCTCGACGTAA 549 0.4153 MENLFPQRICQELKLKTIMAKCRISEAVHVALLGLQDAGAVASSSAAKIYGLNILAEDIQDDSDNVTRFLMLAREPIIPGTDRPFKTSVVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRADDNNNSKYFDYLFYVDFEASMADQNAQNALRHLKEFATFLRVLGSYPVDTTST 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01417 182 ProSitePatterns Prephenate dehydratase signature 1. 50 72 IPR018528 GO:0004664|GO:0009094
Spst11g01417 182 FunFam Arogenate dehydratase 81 179 - -
Spst11g01417 182 SUPERFAMILY Periplasmic binding protein-like II 35 80 - -
Spst11g01417 182 ProSiteProfiles Prephenate dehydratase domain profile. 1 74 IPR001086 GO:0004664|GO:0009094
Spst11g01417 182 Pfam Prephenate dehydratase 33 76 IPR001086 GO:0004664|GO:0009094
Spst11g01417 182 Gene3D - 81 179 - -
Spst11g01417 182 ProSiteProfiles ACT domain profile. 88 176 IPR002912 -
Spst11g01417 182 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 27 181 - -
Spst11g01417 182 Gene3D - 9 62 - -
Spst11g01417 182 CDD ACT_CM-PDT 86 176 - -
Spst11g01417 182 SUPERFAMILY ACT-like 69 177 IPR045865 -
Spst11g01417 182 ProSitePatterns Prephenate dehydratase signature 2. 114 121 IPR018528 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01417 Spst-Chr11 38558620 38560083 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01417 K05359 - gmx:100787387 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01417 11 38558620 38560083 Spst11g01417 11 38558620 38560083 ECH