Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01339 ATGGCCGGCAAAGGTGGAGCGACTCCGGCGACATACTCGCCGTCTCCGACGACCGATAAACAGAAACCAGCGCTTTTCAAGGAAGATTGGGTTCGGCCCGATGGCCGCGGTTTCCACCAGTGCAGACCCGCGTTTTTCAGGACTGGTGCTGTGAATGCAGCATCTGGATCTGCTTATGCTGAGTTTGGAAATACCAAGGTCATTGTATCTGTATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCGTTTGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCAGTACGAGGGCAGGGTTCAGACCACAATGAGTACAGTGCGATGCTTCATAAAGCTCTGGAGGGTGGAATAATACTGGAAAGTTTCCCCAAGACAACCGTGGATGTTTTTGCATTGGTGCTGGAATCTAGCGGCAGTGATCTCCCAGTTGTCATATCATGTGCTAGTCTTGCTCTGGCTGATGCTGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTGTCAAGTTTTAGTAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAACTGCCAAGATGGTAGTTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTCACTGTTACTGGGGAATGGTCTTCCCCGAAGATTAACGAGGGAATGCAGCTGTGCTTGGATGCTTGTGCAAAGCTTGCTAAGATTATGAGGTCATGTTTGAAAGAAGCTGCTTCGGATTCTAAGGAGTAG 765 0.4732 MAGKGGATPATYSPSPTTDKQKPALFKEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPVRGQGSDHNEYSAMLHKALEGGIILESFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVSVSSFSKNLVIDPVLEEENCQDGSLMITCMPSRYEITQLTVTGEWSSPKINEGMQLCLDACAKLAKIMRSCLKEAASDSKE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01339 254 SUPERFAMILY Ribonuclease PH domain 2-like 166 251 IPR036345 -
Spst11g01339 254 SUPERFAMILY Ribosomal protein S5 domain 2-like 27 195 IPR020568 -
Spst11g01339 254 Gene3D - 18 253 IPR027408 -
Spst11g01339 254 Pfam 3' exoribonuclease family, domain 2 168 228 IPR015847 -
Spst11g01339 254 PANTHER EXOSOME COMPLEX COMPONENT 32 245 - -
Spst11g01339 254 FunFam Exosome complex component RRP41-like 12 250 - -
Spst11g01339 254 CDD RNase_PH_MTR3 41 247 - -
Spst11g01339 254 MobiDBLite consensus disorder prediction 1 24 - -
Spst11g01339 254 Pfam 3' exoribonuclease family, domain 1 40 164 IPR001247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01339 Spst-Chr11 37904387 37908498 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01339 K12587 - gmx:100816271 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01339 11 37904387 37908498 Spst11g01339 11 37904387 37908498 ECH