Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01267 ATGGCTCCAAAACGTGCTGAGAAGTTGGTGGTGAGATCCACCAAGAAAGTGGTGGAATCAAGTGTGCAAGTTTCGGTTGTAGGCACCAACAGAAAAAGACAAACCCGTGGAAGCAAAGATAATATTCAAACAGAAGAAGCAGTAGGTGGCCAAGAGAATGTGATAGTCATTCCTATCCAAGAAGTGAACCCTGAAGCCCAAAAGAATTCGTCTACCTCTGTCATCACTAATGAAAACAAAGGTGAGCAAGACAACACTACTCAAGATGGTGGAGTCCAAAATCAAGAGAAAGAGAACAAGGGAGAGATTGAAGAAGTCGAGAAGAAGAAGGCCAAGACCCCAAAAGGGCATAATGGTAAAGAGAAAAAGAGAGGGAGGAGAAGTGCAGAAGGTTATCAGAGGTATGTGTATAGGGTGTTGAAGCAGGTGCACCCTGAAATGGGAATCTCTTCCAAATGCATGATTATTCTGAACAACTTGATGAATGACATGTTTGAGAGGCTGGCTGGTGAGGCTGCTAAGCTGAAGGACTACACTGGACACATGACATTGTCTTCAAGGGAGATTCAAGGAGCAGTGAAGCTGGTTTTGCCAGGAGAGCTTGGGAAGCATGCCATTGCTGAAGGGGTCAAGGCTGTGAATACCTTCACCTCCTATGACACCTGA 666 0.452 MAPKRAEKLVVRSTKKVVESSVQVSVVGTNRKRQTRGSKDNIQTEEAVGGQENVIVIPIQEVNPEAQKNSSTSVITNENKGEQDNTTQDGGVQNQEKENKGEIEEVEKKKAKTPKGHNGKEKKRGRRSAEGYQRYVYRVLKQVHPEMGISSKCMIILNNLMNDMFERLAGEAAKLKDYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNTFTSYDT 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01267 221 SUPERFAMILY Histone-fold 106 218 IPR009072 GO:0046982
Spst11g01267 221 MobiDBLite consensus disorder prediction 63 94 - -
Spst11g01267 221 PANTHER HISTONE H2B 107 218 IPR000558 GO:0000786|GO:0003677|GO:0030527
Spst11g01267 221 FunFam Histone H2B 92 219 - -
Spst11g01267 221 MobiDBLite consensus disorder prediction 29 128 - -
Spst11g01267 221 Gene3D Histone, subunit A 90 219 IPR009072 GO:0046982
Spst11g01267 221 MobiDBLite consensus disorder prediction 95 114 - -
Spst11g01267 221 Coils Coil 92 112 - -
Spst11g01267 221 SMART h2b3 122 218 IPR000558 GO:0000786|GO:0003677|GO:0030527
Spst11g01267 221 PRINTS Histone H2B signature 203 216 IPR000558 GO:0000786|GO:0003677|GO:0030527
Spst11g01267 221 PRINTS Histone H2B signature 132 150 IPR000558 GO:0000786|GO:0003677|GO:0030527
Spst11g01267 221 PRINTS Histone H2B signature 190 203 IPR000558 GO:0000786|GO:0003677|GO:0030527
Spst11g01267 221 PRINTS Histone H2B signature 173 190 IPR000558 GO:0000786|GO:0003677|GO:0030527
Spst11g01267 221 PRINTS Histone H2B signature 151 171 IPR000558 GO:0000786|GO:0003677|GO:0030527
Spst11g01267 221 Pfam Core histone H2A/H2B/H3/H4 78 195 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01267 Spst-Chr11 37159166 37159831 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01267 K11252 - gmx:100786873 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01267 11 37159166 37159831 Spst11g01267 11 37159166 37159831 ECH