Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01257 ATGGCTCCGTTTCCGTCCGAGAACGGCGTAGAAGGAGACGACGAGAGAGAAGAGGAAGACGAAGAGGAAGAAGAAGACGAAGAAGAAGTGGAGGATGAAGAAGACGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATACCTTCGCTGCTAGCGAGTGACGCCGCTTCGTGTATTGCCGTTGCGGAGCGGATGATCGCTCTCGGCACTCACGGCGGCACCGTTCATATCCTCGATTTTCTCGGGAATCAGGTTAAGGAATTCTCTGCACATGCTTCTGTTGTCAATGACCTTAGCTTTGACACTGAAGGGGAATATATCGCAAGCTGTTCTGATGACGGATCAGTTGTGATAAACAGCCTTTTCACTGTTGAGAAATTGAAGTTTGAGTACCATCGGCCCATGAAGGCTGTTGCATTGGATCCAGATTATGCAAGGAAAATGTCCAGAAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTGGGCTACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTTAAGGTTTATGATACTGCCAATGACCAGCGTATTACGTTTATTGAAAAACCACGAGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTAGTTTGGCAGGATGATACCCTCTTGGTTATTGGCTGGGGAAAATCTGTCAAAATTGCTTCAATTAGGACAAATCACCTAAGAGCAGCCAATGGATCATTCAGGCAAGTTCCTTTGTCTGGTATGGCCCAGGTGGATATTGTTGCATCTTTCCAAACCAGCTATTTCATCTCAGGACTTGCTCCCTTTGGTGATGCCTTGGTTGTTCTTGCATATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCTCTGCTCCTCCACGACAGGGCAATGCACAAAGACCAGAAGTAAGAATTGTAACTTGGAATAATGATGAGCTTTCTACAGATGCTCTACCAGTACATGGGTTCGAGCATTACAGGGCAAAAGACTATTCTCTTGCACATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAGCCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAGCCAAGGGATACTGAAGATCATATTGCGTGGCTTCTTCAGCATGGGTATCATGAAAAAGCATTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAAGCAGCATCTCTGTGTCCTAAGTTGCTTCGGGGATCAGCTTCAGCTTGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGGCAACTCCCTGTTTTAGTTCCTTACATGCCTACGGAAAACCCCAGATTACGAGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCCACAAATCCATCTTTTCATAAGGATCTCTTGTCCACTTTAAAATTCTGGCCATCTGCAATTTATTCTGCATTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCATCTATGACTGATTCACTTAAGGAGGCATTAGCAGAGTTGTATGTAATCAATGGGCAATATGAGAAGGCCTTCTCATTATATGCCGATCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACATGATGCAATTCGTGGAAAGGTTGTTCAACTAATGATGCTGGATTGCAAGCGTGCAGTTCCTTTGTTGATCCAGAATAGGGACTTAATAAGTCCAACTGAAGCTGTGAAGCAACTTCTAAATGCTGATGATAACAGTGATCGTAGATATTTTTTACATTTATATCTCCATTCATTATTTGAAGTAAACCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCGGATTATGATCCAAAGATGCTGCTACCTTTTCTTCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTATGAAATTTGCATTAAAAGGGACCTATTGAGGGAGCAGGTCTTCATCTTGGGAAGGATGGGAAACTCAAAACAAGCCCTATCTGTTATTATAAACCATTTGGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAACTGATCAAGCAATGCCTTCACAAACCCGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTCGATCCCCTTTACATCGTAAATAAGGTTCCCAACGGATTGGAAATACCTCGGCTCCGGGATCGACTGGTTAAGATTATCACTGACTACAGAACTGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGCTGACTGTGTCAATCTTTTAATAAAGTATTACAAAGAGGCAAGGCATGGAATTTCTTTAGGTAATGAAGAAGATGAGCCACGGGCTAAAATGAGTGATACTCGTGCTTCTCAGGCATTTGAGAAATCCCCGAGTTTGAGAACTACGGAGGTGAAGTCAAAGACGAGGGGAGGTGGAAGATGCTGTATATGTTTTGATCCATTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAAATTGCCTCATGGATTCGTCTTACACTAGTAGTAACAAGAAAGAAGCCACGTCCCTACAGGCAGAAATGTATGATGATTACAATGGTTACGAGGACGATCGTAGTGATGACGAAGAAGATGAAGAAACCAAGTCAGGTGGCCCTCGTATGCGTTGTATATTGTGTACTACTGCTGCTAGTTAG 2871 0.434 MAPFPSENGVEGDDEREEEDEEEEEDEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIASCSDDGSVVINSLFTVEKLKFEYHRPMKAVALDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGKSVKIASIRTNHLRAANGSFRQVPLSGMAQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSSSAPPRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGYHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTLKFWPSAIYSALPVISAIEPQLNTSSMTDSLKEALAELYVINGQYEKAFSLYADLMKPEVFDFIDKHNLHDAIRGKVVQLMMLDCKRAVPLLIQNRDLISPTEAVKQLLNADDNSDRRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALSVIINHLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGISLGNEEDEPRAKMSDTRASQAFEKSPSLRTTEVKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTNCLMDSSYTSSNKKEATSLQAEMYDDYNGYEDDRSDDEEDEETKSGGPRMRCILCTTAAS 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01257 956 MobiDBLite consensus disorder prediction 920 945 - -
Spst11g01257 956 PANTHER VACUOLAR PROTEIN SORTING VPS41 13 933 IPR045111 GO:0006623
Spst11g01257 956 SUPERFAMILY Putative isomerase YbhE 67 263 - -
Spst11g01257 956 Coils Coil 16 38 - -
Spst11g01257 956 Pfam WD domain, G-beta repeat 85 121 IPR001680 GO:0005515
Spst11g01257 956 CDD RING-H2_Vps8 869 903 - -
Spst11g01257 956 PIRSF Vps41 904 946 IPR016902 GO:0034058|GO:0046907
Spst11g01257 956 PIRSF Vps41 1 913 IPR016902 GO:0034058|GO:0046907
Spst11g01257 956 FunFam Vacuolar protein sorting-associated protein 41 homolog 9 282 - -
Spst11g01257 956 Gene3D Tetratricopeptide repeat domain 545 820 IPR011990 GO:0005515
Spst11g01257 956 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 610 757 IPR000547 GO:0006886|GO:0016192
Spst11g01257 956 MobiDBLite consensus disorder prediction 1 41 - -
Spst11g01257 956 SMART CLH_2 610 757 IPR000547 GO:0006886|GO:0016192
Spst11g01257 956 FunFam Vacuolar protein sorting-associated protein 41 homolog 551 816 - -
Spst11g01257 956 SMART WD40_4 172 208 IPR001680 GO:0005515
Spst11g01257 956 SMART WD40_4 84 123 IPR001680 GO:0005515
Spst11g01257 956 MobiDBLite consensus disorder prediction 11 37 - -
Spst11g01257 956 Pfam Region in Clathrin and VPS 611 753 IPR000547 GO:0006886|GO:0016192
Spst11g01257 956 SMART ring_2 871 951 IPR001841 -
Spst11g01257 956 Gene3D - 8 278 IPR015943 GO:0005515
Spst11g01257 956 SUPERFAMILY RING/U-box 864 908 - -
Spst11g01257 956 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 832 912 IPR013083 -
Spst11g01257 956 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 121 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01257 K20184 - gmx:100804340 1771.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01257 11 37047533 37063893 Spst11g01257 11 37047533 37063893 ECH