Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01237 ATGTCCCGAAAGCATTTTCGTCTCCACCTTCACACTCCGTGGAAGAAGCACTATCAGTTTCCACTTCCACGTAACGTGGTTACCCTCTCCGACGGAGTTCAACAACCCTCAGACGCCTCCATAGCCAAACTAGTCCTCGAATCAGACCCACTCACTCTCTACGAGGCCCTATCCAGACCCACGGTCCAATGGGCCCCCGAGCTCGTCAACAAGGTCTTGAAGCGCCTCTGGAACCACGGGCCCAAGGCCCTCCAATTCTTCAAACATTTGGACCGCCACCCTTCCTACATCCACTCCTCCTCGTCGTTCGACCATGCCATCGACATCACGGCCCGCATGCGCGACTACAACGCCGCGTGGGCCTTAGTGGGCCGCATGCGCTCCCTCCGCTGCGGCCCAACTCCCCGAACCTTTGCCATCCTCGCCGAGCGGTACGCCGCGAACGGAAAACCCCACCGCGCCGTCAGAACCTTCCTCTCCATGCACGAGCACGGTTGCCGCCAGGACCTCAACTCCTTCAACACCGTCCTCGACGTCCTCTGCAAATCGAAGCGCGTGGAAATGGCGCACACGTTGCTCAAAACGCTAAGATCCAGATTCAAACCCGATTGCGTGAGCTACAACATAATCGCCAACGGTTATTGCTTAATCAAACGCACGCCGATCGCATTGAAGGTTCTGAAGGAAATGGTGCAGCGAGGGATAAACCCTACGATGGTCACGTATAACACGTTGCTGAAAGGGTATTTTCGGAGTAATCAGATTAAGGAGGCTTGGGAGTTTTACTTGGAGATGAAGAAGAGAAAGTGCGAGATTGATGTTGTGACTTACACGACTGTGATTCACGGGTTTGGGGTAGCGGGTGAGGTTAAGAAATCTCGTAGGGTTTTTGATGAGATGGTGAAGGAGGGTGTGGCACCTGGTGTTGCCACGTGTAATGCGTTGATTCAGGTCTTGTGTAAGAAGGATAGTGTGGAGAATGCGGTGGTGGTTTTTGAGGAGTTGGTGAGGAAGGGGTTGTGTGTGCCGAATTTGGTTACTTACAACGTTGTTATCAGAGGTTTGTGTCATGTTGGTGACATGGAGAGGGCGTTGGGGTTTATGGTGAGAATGGGGGAGCATGGTTTGAGAGCTAGTGTTCAGACTTACAATGTTGTGATTAGGTACTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGGAGATGTTTGGGAAGATGAAGGATGAGTCTTGCTTGCCCAATTTGGATACTTACAATGTTCTGATTAGTGCCATGTTTGTGAGGAAGAAGTCGGAGGATTTGGTGATGGCTGGGAAGTTGTTGATGGAGATGGTTGATAGAGGGTTCTTGCCGCGGAAGTTTGCTTTCAATAGGGTGTTGAATGGACTTGTTATTACTGGGAATCAGGATTTTGCCAAGGAGATTCTGAGAATGCAGAGCAGGTGTGGTCGTGTTGTTCGGCGTTTGAAATTGTGA 1476 0.5122 MSRKHFRLHLHTPWKKHYQFPLPRNVVTLSDGVQQPSDASIAKLVLESDPLTLYEALSRPTVQWAPELVNKVLKRLWNHGPKALQFFKHLDRHPSYIHSSSSFDHAIDITARMRDYNAAWALVGRMRSLRCGPTPRTFAILAERYAANGKPHRAVRTFLSMHEHGCRQDLNSFNTVLDVLCKSKRVEMAHTLLKTLRSRFKPDCVSYNIIANGYCLIKRTPIALKVLKEMVQRGINPTMVTYNTLLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGEVKKSRRVFDEMVKEGVAPGVATCNALIQVLCKKDSVENAVVVFEELVRKGLCVPNLVTYNVVIRGLCHVGDMERALGFMVRMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEMFGKMKDESCLPNLDTYNVLISAMFVRKKSEDLVMAGKLLMEMVDRGFLPRKFAFNRVLNGLVITGNQDFAKEILRMQSRCGRVVRRLKL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01237 491 Pfam PPR repeat family 169 215 IPR002885 -
Spst11g01237 491 Pfam PPR repeat family 307 357 IPR002885 -
Spst11g01237 491 Pfam PPR repeat family 237 284 IPR002885 -
Spst11g01237 491 Pfam PPR repeat family 379 425 IPR002885 -
Spst11g01237 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Spst11g01237 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Spst11g01237 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 451 IPR002885 -
Spst11g01237 491 Gene3D Tetratricopeptide repeat domain 300 372 IPR011990 GO:0005515
Spst11g01237 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Spst11g01237 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Spst11g01237 491 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 200 479 - -
Spst11g01237 491 Pfam PPR repeat 140 166 IPR002885 -
Spst11g01237 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Spst11g01237 491 Gene3D Tetratricopeptide repeat domain 373 489 IPR011990 GO:0005515
Spst11g01237 491 Gene3D Tetratricopeptide repeat domain 48 197 IPR011990 GO:0005515
Spst11g01237 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Spst11g01237 491 Gene3D Tetratricopeptide repeat domain 198 298 IPR011990 GO:0005515
Spst11g01237 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Spst11g01237 491 NCBIfam pentatricopeptide repeat 275 308 IPR002885 -
Spst11g01237 491 NCBIfam pentatricopeptide repeat 205 238 IPR002885 -
Spst11g01237 491 NCBIfam pentatricopeptide repeat 382 414 IPR002885 -
Spst11g01237 491 NCBIfam pentatricopeptide repeat 311 343 IPR002885 -
Spst11g01237 491 NCBIfam pentatricopeptide repeat 172 199 IPR002885 -
Spst11g01237 491 NCBIfam pentatricopeptide repeat 346 378 IPR002885 -
Spst11g01237 491 NCBIfam pentatricopeptide repeat 240 274 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01237 132 486 Glycosyltransferase AT1G05670 28.492 9.66e-44 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01237 - - gmx:100808784 840.106