Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01203 ATGCTGAGGCATGAAAGGCTCAGGGAAAGGTTTGCTACCGAGCACTTGCAGGGTGAGGTGGAGGTTAATGGAAGGAAGAGTCTATTTCTTCAAGTTAGAGCTGGTCAAGGTGATGGAGCAGAGAAAGAGAGGTGGCACCTGAAGGCTTCCAGTGAAGGGTTGAGTAGAAGGTCGCAAGATGTGCAGTACATTAAGGAGCTTTTGGAAATTTTGAAGGTTCAGGAAACGAGGTCGCATGTTCATGCACCTGGGGAAGAAGAGAAGGTTATGACAAGGAAGCAGAAAGCTGAGTCCAAGGCACACGAAGGGGAGCATTCTCCTAAGAAGGCCAGGGTGGAAAATGAAGATGGTCACGTCAACGGGAAAACTGTAGCTGATGTTGTAGAAGAATATGATGAGTTTTGCAAAGCCATAAATGAGCACCTTCCTTTGGAGCAAATGAGAGAGATTCTCGAGGCTAATGGCCTCGATTCTTCTGGCTCTGATCTTGAAATTACTCGAAAATGCCAAGACTTGCTGTTTTATGGTGCATTGGACAAGTGCTCTGTTTGCAATGGGAGTTTGGAGTTTGATGGCCGACGTTATGTTTGCAGAGGGTTCTACAGTGAGTGGGCTAGTTGCACTTTCAGCACCAGAAACCCTCCAAGGAAACAGGAACCCATTAAGCTACCTGATTCTGTTCAGAACTCTCTGCCTTCAGACTTGCTAAAGAAATATCAGGACCCAAGTGACAGGCCTCACAGGGATACAGGCTTAGCTGAAAAACCCTTTACTGGAATGATGATATCTCTGATGGGGCGTCTTACTCGGACACATCATTATTGGAAAAGAGCTATTGAAAAGCATGGAGGGAAAGTGGCAAATTCTATAATTGGGGCTAATTGTTTGATAGCTTCACCTGCTGAGCGAGAACGTGGTGGCACATCCAAACTTGCAGAAGCCATGGAGAGAGGTATAGCAGTGGTTAGGGAGGCTTGGCTGATTGACAGCATTGAAAAGCAAGAACCACAGCCTTTAGAAGCTTATGATCTTGTCTCTGATCTTTCCGTGGATGGCAAGGGAATCCCCTGGGACAAACAAGATCCTGGGGAGGAAGCTATTGAATCACTCTCAGCAGAACTTAAACTTTATGGGAAGAGAGGGGTGTATAAAGATACCAAGTTGCAGGAACAAGGTGGAAAGATATTTGAAAGAGATGGGATATTATACAACTGTGCCTTCTCCCTTTGCGACCAAGGGAGAGGACTGAATGACTACTGTATTATGCAACTGATCGTTGTCCCAGAAAATCGTTTGCATCTGTACTTTAAGAAAGGGAGAGTTGGTGATGATCCAAATGCAGAGGAGCGATCAGAAGAGTTGGACAATATAGACAGTGCTCTGAAAGAGTTTGTCAGACTCTTCGAGGAAATAACAGGAAATGAGTTCGAGCCTTGGGAAAGAGAGAAGAAGTTCCAGAAGAAGCCATTGAAGTTCTACCCCATTGACATGGATGATGGAGTTGAAGTTAGACACGGAGCACTAGGCCTTCGGCAGCTGGGGATAGCAGTAACACACTGTAAACTTGAGCCTTTGGTTGCAAATTTTATCAAGGTTTTGTGCAGTCAGGAGATATACAAGTATGCATTGATGGAGATGGGTTACGACTCACCGGAGCTTCCAATAGGAATGGTTACAAATCTTCATCTGCAAAGATGTGAGGACGTTCTCTTGGAATTCATCGACAAGGTGAAATCATTGAAAGAAACTGGCCCCAAGGCTGAGGCTGTTTGGACTGATTTTAGCCAAAGATGGTTCACTCTGATGCACTCGACAAGGCCTTTCATTTTTCGAGATTATCAAGATATTGCAGATCATGCTGCTGCTGCCTTGGAGGGGGCCAGAGACATAACCCTCGCTTCTCACCTCATAGGAGATATGACTGGCTCAACAATCGATGACCCATTATCAGAGACATATAAGAAATTGGATTGCTCAATTTCTCCCCTGGAAAAAAGTTCAAATGATTATCAGATGATAGTGAAATATCTTGAAAACACTTATGAGCCAGTCAAAGTTGGTGATGTAGATTATGGGGTGTCAGTGGAAAACATTTTTGCGGTGCAAACAGGTGGTTGCCCTTCCTATGAAGACATAGTTAAAATGCCGAATAAAGTTCTTCTATGGTGTGGATCACGAACCTCAAACCTTTTGAGGCACTTGCGCTGGGGATTCGAGCCAGCAATATGTTCACTACCAGTTCCGGGTTATATGTTTGGCAAAGCTATTGTCTGTTCCGATGCTGCAGCAGAGGCTGCAAGATATGGTTTTACAGCTGTGGACAGACCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTTAAGAGCCCACCCGAGGATACATCATCTTTGGAAGAAAAGAAGCTTGGAGTGAAGGGACTGGGGAAGAAGAAAACAGATGAATCCGAACATTTTGTTTGGAGAGATGATATAAAAGTTCCTTGTGGTAAACTAGTTGCCTCAGATCATCAAGATAGCCCCCTGGAATACAACGAGTATGCTGTCTACGACCCGAAGCAGGCACGCATAAGCTTCTTGGTGGGGGTGAAGTATGAAGAGAAGGGTGCGGAGATTGACACAGCTGAGTGA 2649 0.4496 MLRHERLRERFATEHLQGEVEVNGRKSLFLQVRAGQGDGAEKERWHLKASSEGLSRRSQDVQYIKELLEILKVQETRSHVHAPGEEEKVMTRKQKAESKAHEGEHSPKKARVENEDGHVNGKTVADVVEEYDEFCKAINEHLPLEQMREILEANGLDSSGSDLEITRKCQDLLFYGALDKCSVCNGSLEFDGRRYVCRGFYSEWASCTFSTRNPPRKQEPIKLPDSVQNSLPSDLLKKYQDPSDRPHRDTGLAEKPFTGMMISLMGRLTRTHHYWKRAIEKHGGKVANSIIGANCLIASPAERERGGTSKLAEAMERGIAVVREAWLIDSIEKQEPQPLEAYDLVSDLSVDGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQGGKIFERDGILYNCAFSLCDQGRGLNDYCIMQLIVVPENRLHLYFKKGRVGDDPNAEERSEELDNIDSALKEFVRLFEEITGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAVTHCKLEPLVANFIKVLCSQEIYKYALMEMGYDSPELPIGMVTNLHLQRCEDVLLEFIDKVKSLKETGPKAEAVWTDFSQRWFTLMHSTRPFIFRDYQDIADHAAAALEGARDITLASHLIGDMTGSTIDDPLSETYKKLDCSISPLEKSSNDYQMIVKYLENTYEPVKVGDVDYGVSVENIFAVQTGGCPSYEDIVKMPNKVLLWCGSRTSNLLRHLRWGFEPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITEFKSPPEDTSSLEEKKLGVKGLGKKKTDESEHFVWRDDIKVPCGKLVASDHQDSPLEYNEYAVYDPKQARISFLVGVKYEEKGAEIDTAE 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01203 882 SMART WGR_cls 403 486 IPR008893 -
Spst11g01203 882 MobiDBLite consensus disorder prediction 238 252 - -
Spst11g01203 882 SUPERFAMILY BRCT domain 254 355 IPR036420 -
Spst11g01203 882 ProSiteProfiles PARP catalytic domain profile. 647 878 IPR012317 GO:0003950
Spst11g01203 882 Gene3D - 657 873 - -
Spst11g01203 882 Pfam WGR domain 403 482 IPR008893 -
Spst11g01203 882 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 519 655 IPR036616 GO:0003950
Spst11g01203 882 PANTHER DNA LIGASE 57 870 - -
Spst11g01203 882 ProSiteProfiles WGR domain profile. 392 492 IPR008893 -
Spst11g01203 882 FunFam Poly [ADP-ribose] polymerase 514 656 - -
Spst11g01203 882 CDD BRCT_PARP1 257 332 - -
Spst11g01203 882 SUPERFAMILY WGR domain-like 368 497 IPR036930 -
Spst11g01203 882 FunFam Poly [ADP-ribose] polymerase 657 873 - -
Spst11g01203 882 SMART PADR1_2 165 218 IPR012982 GO:0008270
Spst11g01203 882 Pfam BRCA1 C Terminus (BRCT) domain 254 331 IPR001357 -
Spst11g01203 882 Pfam Poly(ADP-ribose) polymerase, regulatory domain 520 653 IPR004102 GO:0003950
Spst11g01203 882 CDD parp_like 519 870 - -
Spst11g01203 882 ProSiteProfiles PARP alpha-helical domain profile. 519 638 IPR004102 GO:0003950
Spst11g01203 882 MobiDBLite consensus disorder prediction 211 253 - -
Spst11g01203 882 MobiDBLite consensus disorder prediction 79 118 - -
Spst11g01203 882 ProSiteProfiles BRCT domain profile. 252 344 IPR001357 -
Spst11g01203 882 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 111 249 IPR047572 GO:0008270
Spst11g01203 882 SUPERFAMILY ADP-ribosylation 656 873 - -
Spst11g01203 882 FunFam Poly [ADP-ribose] polymerase 124 248 - -
Spst11g01203 882 CDD WGR_PARP1_like 393 499 - -
Spst11g01203 882 Gene3D - 515 656 IPR036616 GO:0003950
Spst11g01203 882 Pfam PADR1 (NUC008) domain 167 217 IPR012982 GO:0008270
Spst11g01203 882 Gene3D - 122 245 - -
Spst11g01203 882 SMART BRCT_7 254 334 IPR001357 -
Spst11g01203 882 Gene3D BRCT domain 251 350 IPR036420 -
Spst11g01203 882 Pfam Poly(ADP-ribose) polymerase catalytic domain 667 870 IPR012317 GO:0003950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01203 K10798 - gmx:100788978 1521.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01203 11 36350883 36360426 Spst11g01203 11 36350883 36360426 ECH