Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01197 ATGCAGGTGGTGAAGAAGCTGAAGCCAGATGCAGAGTTGTTTGATAGATATAGCGTTGTGAGGGGTTTGCTAGTTGGGAATTGCAGCATCATGGACCAGCTTCCTGTTGAAGTGATTGGGAACATTCTGTCTCGCTTGAGGGCTGCACGAGATGTGGTGATAGCCTCTGCAACATGCAGGAAATGGCGAATAGCGTGCTGCAAGCACCTTCATACCCTCTCCTTCAGCTCCAAAGATTGGCCCATTTATCGAGATTTGACGACTACCCGCCTTGAGATTTTGATCACACAAACCATTTTTCAGACCTCAGCGTTGCAGGCTCTCTCCATTTTGATGGAAGATGTGGATGAATTCTCGGCTTCAACGGTTACTGCTTGGCTCTTGTACACCAGGGAAACTTTGAGGCAATTGCATTATAATGTCAAGACTATGCCTAATGTTAACATTCTTGAAATATGTGGCAGGCACAAGCTGGAAATACTAGATCTGGCTCATAATTCCATTGTGGGGGTTGAGCCTAATTATCAGCGATTCCCTTGTTTGAAGTCTCTTTCCCTCAGCTATGTCAGTATATCTGCATTGGATCTGAATCTTTTGGTATCTGCGTGTCCCAGGATTGAAGGTTTGGAGCTTGTCAATCCTGAGATTGCAATGTCTGATGCACAGGTGACTGTTGAATTGAGTAGTTCAACGCTGAAGAGTGTGTATGTAGAAGCAATCAGTTTGGACAAGTTTATTTTAGAGGCTGATGGGCTTGAGACCTTGCACTTAAAAGATTGTGCACTTGAGATTTTTGAACTCGTTGGCAAGGGGACCTTGAAGAATTTTAAGATTGATGATGTTAGTGTTATACATCTTGATATTGGTGACACAATTGAGGATCTTGAAACTGTGGATATTAGCAACTTCACAATTATATGGCCAAAGTTTTACCAGATGATTTCAAGATCATCAAATTTAAAGAGGCTTCGACTTTGGGATGTGATGTTTGACGACGAGGATGAGGTGGTGGATTTGGAAACAATTGCAACTTGCTTTCCTTACCTGAGCCATTTATCTCTGAGTTATGATGTGAGAGATGGAGTCCTTCACTATAGTTTACAAGGCTCTTCCTATCTTGAGAATGTGGCTGTCTTGGAGCTTGGCTGGACTGTGATCAATGATCTTTTCTCCCACTGGGTTGAGGGTCTGCTTAAGCGATGCCCCAATCTCAAGAAGTTGGTCATTCATGGGGTTGTTTCTGAGGCTAAGTCTCATGAAGAATGCCAGATGTTAGCCAGTTTCACCACATCCATGGTTGAGATGATGAGGAGATACACACATGTAGATCCACATTTTAAGTATGAATAG 1350 0.4304 MQVVKKLKPDAELFDRYSVVRGLLVGNCSIMDQLPVEVIGNILSRLRAARDVVIASATCRKWRIACCKHLHTLSFSSKDWPIYRDLTTTRLEILITQTIFQTSALQALSILMEDVDEFSASTVTAWLLYTRETLRQLHYNVKTMPNVNILEICGRHKLEILDLAHNSIVGVEPNYQRFPCLKSLSLSYVSISALDLNLLVSACPRIEGLELVNPEIAMSDAQVTVELSSSTLKSVYVEAISLDKFILEADGLETLHLKDCALEIFELVGKGTLKNFKIDDVSVIHLDIGDTIEDLETVDISNFTIIWPKFYQMISRSSNLKRLRLWDVMFDDEDEVVDLETIATCFPYLSHLSLSYDVRDGVLHYSLQGSSYLENVAVLELGWTVINDLFSHWVEGLLKRCPNLKKLVIHGVVSEAKSHEECQMLASFTTSMVEMMRRYTHVDPHFKYE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01197 449 SUPERFAMILY F-box domain 28 85 IPR036047 GO:0005515
Spst11g01197 449 SUPERFAMILY RNI-like 102 411 - -
Spst11g01197 449 Pfam F-box-like 32 69 IPR001810 GO:0005515
Spst11g01197 449 PANTHER F-BOX PROTEIN-LIKE 31 412 - -
Spst11g01197 449 SMART fbox_2 34 75 IPR001810 GO:0005515
Spst11g01197 449 Gene3D - 32 80 - -
Spst11g01197 449 Gene3D Ribonuclease Inhibitor 141 432 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01197 Spst-Chr11 36280872 36283611 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01197 - - vun:114169858 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01197 11 36280872 36283611 Spst11g01197 11 36280872 36283611 ECH