Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01178 ATGACTCGTGTGTTGGTTCAGAGGGGTTCTTCCGGCGGTGGTTCTTCTTCGAACGCGAACCGGAGTGGTGGGTCTTCTTCCAATTCCTCCGTGCGCCCGGAGGCCCAGGTTTTTGTTTCGCCGGAGAATTGCGACGAAGTTGTTGTATCGGATGAGGTTTCGGAGAGTGGCGATAAGGGGAAGAGTGAGGACAGTCTTCATTTTGAGAAGGGAGATGGGTCGTGTGATGATGATATGGCTGCTGCTGCTGTTGTTGAGAGTGATGTAAGGGAGGAGATTGTGAAGGGGTTGAGTGGGCTGAGAGTTGGTGAAAGGGTTGTTACAGAGAGTGAGGGTTCGAGTGGGGATTCTTCTTCCCACCCTGTTGGTGGTGGTGGTTCGTGTCCCCCTCCACCTCCGGTGCCGCCTCCCAAACCTTCTGTGGCGGGGAACTTGAATTCAAGAAGGAGTGTGACCGGGAGTTTGAATTCGGGCAGTGTGGGATCGTCGAGGAGGACATCTGCATGGCCGGTTGTTCCGGCCAGGACTTCGCCTGCGGGGTCTAGGCCGTCTTCTCCTAGGGCACATAATGAAAGTGAGGGGTACAATAGTGCTGATGAACAGAAGCCTTGCCTGGTTTCGTCTTATGATGATTTTGAGAGAGAGCGGCAGTTTGAAATTGATATCAGAAGGGCAAAAGGTTATGAAGTAAAAAAAATGATGGAGGATGGAAATTGTCTTTTCCGAGCTGTTGCAGATCAGGTGTATGGGGACTCTGACTTGTATGATTTGGTCAGACAGATGTGCATTGATTATATGGAGCGAGAGAGAGACCACTTTTCTCAGTTCATAACTGAAGGGTTCACATCTTACTGCAAGAGAAAAAGAAGAGATAAGGTTTATGGAAATAACGTTGAAATCCAAGTCATGTGTGAAATGTATAATCGTCCAATTCACATATACTCTTACACCACAGAACCTATCAATATTTTTCATGGAAGCTACAACACTGACACACCACCAATTCGATTGAGTTATCATCATGGGAATCATTACAACTCCCTTGTTGACCCGCGGCGCTTGACAATTGGTGCTGGGCTTGGGTTCAGCAGTCTTCGTGGAACAAATGTTGACAAAGATCAAGTCAAGGCTGCTATTAAAGCTCAGCAGGATGAACAGATCAATAATGCACTTTTAGCCGAGGGTCGGTTTTACTCTGATCTTGAGCTTACAGAAAAGGAAATTGAACGCATGGTGATGGAATTTTCTCGAGCTGAATACCTTGCAGATAGTACATTTAAGCAACAGCTTGGTGACACAGAGTCCTCTACCTCAAACGCTGAACCATCATCTTCTGGAGCAACACGATCATCCGGCACTGATCGGAAGAGAGAAAATGGAAAAGAGCATGGTTCTGATCTGAGTAGTGGAATGCAGATATTACTATCTATGGGATTCACTTACATCCAAGCCATTGAGGCTTACAGCATATTTGGGGACGACGTTGATTCTATGGTTTGTTACCTGTTAGAAACCGGCAGTAGCAGCAGACGTAAGGGCAAGGCCACTGAATGA 1554 0.471 MTRVLVQRGSSGGGSSSNANRSGGSSSNSSVRPEAQVFVSPENCDEVVVSDEVSESGDKGKSEDSLHFEKGDGSCDDDMAAAAVVESDVREEIVKGLSGLRVGERVVTESEGSSGDSSSHPVGGGGSCPPPPPVPPPKPSVAGNLNSRRSVTGSLNSGSVGSSRRTSAWPVVPARTSPAGSRPSSPRAHNESEGYNSADEQKPCLVSSYDDFERERQFEIDIRRAKGYEVKKMMEDGNCLFRAVADQVYGDSDLYDLVRQMCIDYMERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQVMCEMYNRPIHIYSYTTEPINIFHGSYNTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGTNVDKDQVKAAIKAQQDEQINNALLAEGRFYSDLELTEKEIERMVMEFSRAEYLADSTFKQQLGDTESSTSNAEPSSSGATRSSGTDRKRENGKEHGSDLSSGMQILLSMGFTYIQAIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01178 517 Gene3D - 210 361 - -
Spst11g01178 517 PANTHER OTU DOMAIN CONTAINING PROTEIN 169 359 - -
Spst11g01178 517 MobiDBLite consensus disorder prediction 428 467 - -
Spst11g01178 517 MobiDBLite consensus disorder prediction 143 170 - -
Spst11g01178 517 MobiDBLite consensus disorder prediction 178 192 - -
Spst11g01178 517 MobiDBLite consensus disorder prediction 428 450 - -
Spst11g01178 517 MobiDBLite consensus disorder prediction 1 76 - -
Spst11g01178 517 ProSiteProfiles OTU domain profile. 228 351 IPR003323 -
Spst11g01178 517 CDD OTU_plant_OTU6-like 224 350 - -
Spst11g01178 517 FunFam OTU domain-containing protein 5 209 361 - -
Spst11g01178 517 MobiDBLite consensus disorder prediction 52 76 - -
Spst11g01178 517 MobiDBLite consensus disorder prediction 1 36 - -
Spst11g01178 517 Pfam OTU-like cysteine protease 236 345 IPR003323 -
Spst11g01178 517 MobiDBLite consensus disorder prediction 98 200 - -
Spst11g01178 517 MobiDBLite consensus disorder prediction 125 140 - -
Spst11g01178 517 SUPERFAMILY Cysteine proteinases 215 351 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01178 Spst-Chr11 36099822 36105156 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01178 K12655 - gmx:100809162 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01178 11 36099822 36105156 Spst11g01178 11 36099822 36105156 ECH