Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01170 ATGGAGGTGCAACTAGTGTTGTATCAGGCTCAAAAGTTTTTTCTTTGGGATCAAGAATTTTCGTTGAAGAAGAAACTGAAAATAGGAAGCATAGAAATCCATTTGTCTTGCAAGAAGTCCAAAAGAGTAAGGTCTCACCCTCTTCTTCAGTATCTTAACAGTTTGCACTTTGAAATTGGAAATCATCAATACATATCCCTTATTTCTCCTCCATCCCAGAACTCAGCAATGGCTAGTGTCTCATTCGCCTCATCTGCCGCAAGAAGGCTTGAGGGGAAGGTGGCAATGATCACTGGAGGTGCAAGCGGCCTAGCACACGTAGTGATAACCGATGTTCAAGACGATTTGGGTCTCTCTGTTTGCAGAGAGTTAGAATCCGCTTCCTATGTCCACTGTGACGTCACAAACGAAAACGACGTTGAGAATGGCGTTAACACAGCTGTTTCCAAGTATGGGAAACTGGATATCATGGTTAACAACGCTGGCATAATTGATGACATGAAAAGAAGCATACTGGAGAACACGAAGTCGGAATTTGAGGCAGTGATGAAGGTGAACGTAGTTGGTGTTTTTCTTGGAACAAAGCACGCCGCAAGGGTGATGATTCCTGCAGGAAGAGGAAGCATAGTCAACACTGCTAGTGTTTGCGGAAGCATAGGTGGCGTGGCCTCGCACGCTTACACAAGTTCCAAACACGGCGTGGTGGGACTCACGAGAAACACTGCGGTGGAGCTTGGAGCATTCGGTGTGAGGGTGAATTGCGTGTCACCCTTCGTCGTTGCCACGCCCTTGGCTAAGAATGTTTTCAAGCTTGACGACGATGGAGTTCGCGGGTTGTATACAAACCTAAAGGGAGCTGTTCTTGACCCAAACGACGTCGCCGAAGCTGCTCTGTTCTTGGCAAGTGATGAATCCAAGTATGTCAGTGGCCACAATCTTGTCGTTGATGGAACCTTCACTGTCGTTAACAGAGGACTTTGCGTCTTTGGGCAATCTTCTTGA 1002 0.4671 MEVQLVLYQAQKFFLWDQEFSLKKKLKIGSIEIHLSCKKSKRVRSHPLLQYLNSLHFEIGNHQYISLISPPSQNSAMASVSFASSAARRLEGKVAMITGGASGLAHVVITDVQDDLGLSVCRELESASYVHCDVTNENDVENGVNTAVSKYGKLDIMVNNAGIIDDMKRSILENTKSEFEAVMKVNVVGVFLGTKHAARVMIPAGRGSIVNTASVCGSIGGVASHAYTSSKHGVVGLTRNTAVELGAFGVRVNCVSPFVVATPLAKNVFKLDDDGVRGLYTNLKGAVLDPNDVAEAALFLASDESKYVSGHNLVVDGTFTVVNRGLCVFGQSS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01170 333 FunFam Short-chain dehydrogenase reductase 77 324 - -
Spst11g01170 333 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 214 242 IPR020904 GO:0016491
Spst11g01170 333 Pfam Enoyl-(Acyl carrier protein) reductase 105 318 - -
Spst11g01170 333 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 227 246 IPR002347 -
Spst11g01170 333 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 163 IPR002347 -
Spst11g01170 333 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 215 IPR002347 -
Spst11g01170 333 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 86 323 - -
Spst11g01170 333 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 91 321 IPR036291 -
Spst11g01170 333 PRINTS Glucose/ribitol dehydrogenase family signature 283 303 IPR002347 -
Spst11g01170 333 PRINTS Glucose/ribitol dehydrogenase family signature 94 111 IPR002347 -
Spst11g01170 333 PRINTS Glucose/ribitol dehydrogenase family signature 227 246 IPR002347 -
Spst11g01170 333 PRINTS Glucose/ribitol dehydrogenase family signature 152 163 IPR002347 -
Spst11g01170 333 PRINTS Glucose/ribitol dehydrogenase family signature 201 217 IPR002347 -
Spst11g01170 333 PRINTS Glucose/ribitol dehydrogenase family signature 248 265 IPR002347 -
Spst11g01170 333 Gene3D - 78 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01170 Spst-Chr11 36031577 36039189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01170 90 321 Acyl Lipid Metabolism Gene Families AT1G63380 29.572 1.57e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01170 - - gmx:100782627 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01170 11 36031577 36039189 Spst11g01170 11 36031577 36039189 ECH