Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01162 TCTATTAAGGAATCTAAATATGCTTTCCTTCACGCTTTTCGACTCTTCGGAATCTGTGGAATAAATATGGCGATATGGTTGACGGACAAATATCCCAGGGCGGTGCAAGATGTAGACCACGCCATGCGAGACCCAAATGGAGTGAAATATGATAACTTGTATCTTGACATGAATTCCATCATCCACCCTTGCTTTCACCCTGATAATGATCATGGCAATATTCCATTTCCAACATCATTTCAAGATGTCTTCAGAAATATGTTTGACTACATTGATCGACTTGTTGACATTGTTAGGCCTCGCAAGCTCCTATACATGGCTATTGATGCAAGTCATGTTAGAGTGGTTGTGCTTGATGGGGTTGCTCCACGTGCCAAAATGAACCAGCAGCGATCAAGACGTTTTAGATCTGCTAAGGACAATGAAATTCATGAAGCTGAGGAAGAGGGGCTAAGGAAAAAATATGAAATGGAAGGGAAACAAGTTCTTCCTAAACAAGAATCGGAAGTGGCAGATTCCAATATTATAACACCAGGCACTGTATTCATGCATGAACTCTCTAAGGCACTTAAAAGCTACATCTCTTCAAGGATAATTTCTAACGCACTATGGAAGGATATCATGGTAATTCTCTCTGATGCTAGTGTTCCCGGAGAAGGGGAACATAAAATTATGTCATACGTACGCAAACAGCGTAGTCTGGAGGGATATGATCCAAATACAAGCCACTGCTTGTACGGCTCGGATGCTGATCTTATAATGCTTGCAATGGCAACTCATGAACCCCATTTTTCAATATTAAGAGAGGATGTCTCTGTTCAGCAGCAGCCAAAAGTTTCTGTTAATCCTTTCAAGTTTTTGCACATTTGGTTATTGAGGGAGTATCTTGAGTTAGACATGAATATAGAAAATCCTCCCCAAAAATGTAGCAATGATTTTGAGCGGATAATTGATGATTTCATCTTCATGTGCTGTTTTGCTGGAAACGATTTTCTTCCCCGCATGCCATCTTTGAACATGCACGAGGGGGCTATTGATTTGCTAATAACTGTTTACAGGAAAGAATTCAATACACTTGGAGGATATCTTGTGGACATGAGCAGGGTTGGGGAGAAAAATGCTGCTTTTGTGAAATTATCAAGAGTTGAAAAATTTATACTTAAGGTTGGCTCATATGAAGAGGATATCTTTAAGAAAAGATCTGAAATACGAGAACGAACATTGAAAAGGCTTATTCAAGATAGTGAGGATGCTAAGCGCGAAGAAAATAATACAAAATGTTTCTTGGATCTTGACGATGAAAATACTTCTGATTGTACTCTTCTGATTAGGAAGGCACCAGATTCAATGAAATTGTCTGCTACACATGCTGAAATTGAGCAAAACACACAGGATTTAAAAGATGAATTGAAGAGAAGTATTAGAAAAAAATGTGACTTATTTAGGAGTGGAGATTTCCTAATCGACAAGATAAAATTTGGAGCACCTGGTTACAAAGAAAGATATTATAAAACAAAGTTTTCTGTGGAAAGTCCTACTGACATTGAGGCGAAAAGGAAAGAAATAGTCCAGAAGTACACCGAAGGATTGGTGTGGGTTCTTCGATACTATTTTTCAGCAGTTGCTTCGTGGACATGGTTTTATCCATTCCACTATGGTCCATTTGCTTCGGACTTTAAGGGCATGGGTCAAGTTAGAGTAAATTTTGAAAAAGGTGCCCCATTCTTACCAATTGATCAACTTCTAGGTGTCCTCCCCCCGGCAAGTGCTCATGCACTTCCAAAAGCCTATGCACAACTGATGCTGGATGAGCAATCTAGAATATTTGACTTTTATCCAAAGGATTTTGAAGTTGAAACCGAAGGACAGCGCTTCATGTGGCAGGGAATTTGCAAGCTTCCATGGATAGATGATGGCAGGCTTGTGGCTGAAACCAAAAAAATAAAAAATGAATTATCTGAAAATGAAGCCATAAGAAATTCACTCAAAGCCGATAGCTTGTTTGTTAGAAGCTCTAGCAAATTAGCAGAGAAATTTGGCTCACTGTCTATAGACCCAAACGTGCCTTGCAAGTTGGACACAACAATAAGTGAAGGCATTGGGGGTACCGTAAGTCTTTGCCGTGAGTTTGTTGACAATACTTGCTTGGACATTTGTGACAGCAAAGAAGATCGTGTTTTATGTGTAGATTACGAGCTTCCTGCTGGTAGTAATCATATTCCTCGTTTACTATCGGGTGTGAACCTTCCAGAGAAGACAGTATTTGAAGGTGACATCATGGAAACTGTATTGTGGCATGAACGTCAGAAATATTTTAGTCGTTTTGAGAGGGTGCAAGATCAAGATAAATGGAGGAGTGAAAACAGGAACAATAATTCAAGGTTTTCCTCAAATGAAAGAAGCTTTTCATCTAATGCAAGAAACTTTTCATCAAATGCACCTTCCTTCATTCACAAAGGTGCTGGTTGTGTTGGATGGGGTTCAGGTAGAGGGAGAATAGATGAAACAATGAAAAATGAGACACCACACAATTATGCAAGCTCTTATCATGTCACAACTACCAGAGACACCCCAGCACAACACGTTGTGGACGACTTTAGACAATTGAGAATATCAGAGTCTGGTTCCTTTCCAAGGTCTTCTATCAGTTTTCAGTCACGACCATATAATAGTAATAGTAATAATGGTCCCATGAATCAGTCAAAAAATGCTTATAATCATCAAGCTTCACAATCTGAGAAGCCCTTTGGTCGGGGACAAGGTAGGGGTGCATCTAGTAGCAGGTCATTCTGGCCTCAACCGTCTGGTGGAAAATCTCACCAAGTGAAAGATGACAATCGTTGGTAG 2847 0.3976 SIKESKYAFLHAFRLFGICGINMAIWLTDKYPRAVQDVDHAMRDPNGVKYDNLYLDMNSIIHPCFHPDNDHGNIPFPTSFQDVFRNMFDYIDRLVDIVRPRKLLYMAIDASHVRVVVLDGVAPRAKMNQQRSRRFRSAKDNEIHEAEEEGLRKKYEMEGKQVLPKQESEVADSNIITPGTVFMHELSKALKSYISSRIISNALWKDIMVILSDASVPGEGEHKIMSYVRKQRSLEGYDPNTSHCLYGSDADLIMLAMATHEPHFSILREDVSVQQQPKVSVNPFKFLHIWLLREYLELDMNIENPPQKCSNDFERIIDDFIFMCCFAGNDFLPRMPSLNMHEGAIDLLITVYRKEFNTLGGYLVDMSRVGEKNAAFVKLSRVEKFILKVGSYEEDIFKKRSEIRERTLKRLIQDSEDAKREENNTKCFLDLDDENTSDCTLLIRKAPDSMKLSATHAEIEQNTQDLKDELKRSIRKKCDLFRSGDFLIDKIKFGAPGYKERYYKTKFSVESPTDIEAKRKEIVQKYTEGLVWVLRYYFSAVASWTWFYPFHYGPFASDFKGMGQVRVNFEKGAPFLPIDQLLGVLPPASAHALPKAYAQLMLDEQSRIFDFYPKDFEVETEGQRFMWQGICKLPWIDDGRLVAETKKIKNELSENEAIRNSLKADSLFVRSSSKLAEKFGSLSIDPNVPCKLDTTISEGIGGTVSLCREFVDNTCLDICDSKEDRVLCVDYELPAGSNHIPRLLSGVNLPEKTVFEGDIMETVLWHERQKYFSRFERVQDQDKWRSENRNNNSRFSSNERSFSSNARNFSSNAPSFIHKGAGCVGWGSGRGRIDETMKNETPHNYASSYHVTTTRDTPAQHVVDDFRQLRISESGSFPRSSISFQSRPYNSNSNNGPMNQSKNAYNHQASQSEKPFGRGQGRGASSSRSFWPQPSGGKSHQVKDDNRW 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01162 948 MobiDBLite consensus disorder prediction 877 915 - -
Spst11g01162 948 MobiDBLite consensus disorder prediction 922 936 - -
Spst11g01162 948 MobiDBLite consensus disorder prediction 782 806 - -
Spst11g01162 948 MobiDBLite consensus disorder prediction 790 806 - -
Spst11g01162 948 Pfam XRN 5'-3' exonuclease N-terminus 24 270 IPR004859 GO:0003676|GO:0004527
Spst11g01162 948 Pfam Xrn1 helical domain 311 759 IPR041412 -
Spst11g01162 948 CDD PIN_XRN1-2-like 53 296 - -
Spst11g01162 948 PIRSF Exonuclease_Xrn2 273 947 IPR017151 GO:0004534|GO:0005634|GO:0006139
Spst11g01162 948 PIRSF Exonuclease_Xrn2 27 282 IPR017151 GO:0004534|GO:0005634|GO:0006139
Spst11g01162 948 MobiDBLite consensus disorder prediction 877 948 - -
Spst11g01162 948 PANTHER 5'->3' EXORIBONUCLEASE 25 913 IPR027073 -
Spst11g01162 948 Gene3D - 564 662 - -
Spst11g01162 948 Coils Coil 456 476 - -
Spst11g01162 948 Gene3D - 22 148 - -
Spst11g01162 948 Gene3D - 160 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01162 Spst-Chr11 35959564 35967324 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01162 - - gsj:114379404 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01162 11 35959564 35967324 Spst11g01162 11 35959564 35967324 ECH