Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01159 ATGATCCCTGTGGTAATATTAAGGGCAGTAACAGTGCTGCTCTTGTGTGTGACATTTCTCCAAAGTGTGAAGGGTTTTCCACTGCATACCAGTGATCGGTGGATTGTGAACGAAAGTGGGAAGAGGGTGAAGCTAGCATGTGTGAGTTGGGCGTCTCATTTGGATGCTGCTGTTGCTGAGGGCTTAAGCCAACAGCCTTTGGATTTTATTTCCAAGAGAATCAAGTCCATGGGGTTCAACTGTGTGAGACTCACATGGCCACTTTTCTTGCTCACCAATGACTCTCTTGCTTCTCTCACTGTCAGAAACTCTTTCCAAAACCTTGGTCTCCTTCAATCCATCCATGCTGTTCAGGCCATCAACCCCTCCATCATCGACCTTCCACTCATCAAAGCTTACCAGCAGGAAGTGGTGAAAAGCCTAGGGGAGAATGATGTAATGGTGATTTTGGACAACCACCTGAGTCAACCAGGGTGGTGCTGCAGTAACATGGATGGCAATGGCTTCTTCGGGGATGAATATTTTGATCCTGACCTCTGGATTAAGGGCCTTACCAAGATGGCTACAATTTTCAAAGGGGTGCCTAATGTGGTAGGCATGAGCTTGAGAAACGAGTTACGAGGTCCCAAACAAAATGTCAACCAATGGTACAGCTATATGCCAAAAGGAGCAGAAGCAGTGCATGCAGCAAATCCAGATGTTCTTGTGATTCTTTCTGGTCTAAACTTTGACACTGACCTATCATTCATAAAAAAGGGGGCATTGAAACTGAGCTTCAATGGAAAACTGGTGTTGGAGGTGCACTGGTACAGCTTCACTGAGGGTCAAGCATGGACTTCACAGAATGCAAACCAAGTGTGTGGGCAAGTCACAGAAAAGAAGGTGAGAAGAGCAGGGTTCTTGTTGGACCAAGGGTTGCCATTGTTTGTGAGTGAGATTGGGGTGGACATGAGAGGCTCAAATGTCAATGACAATAGGTACCTCAACTGCTTCATGGCATTTGCAGCCCAACATGACTTGGATTGGGCCTGGTGGACACTTGATGGGAGTTACTACATAAAACAAGGGGTCGTTGGAATGAATGAGTATTTTGGTATTCTCAACTCGAATTGGAGTGAGGTTAGGAACACTACTGTCTTGCAGAGGATCTCAGCTATTCAACTTCCTTTTCAAGGGCCAGGTTTATCAGAAGCTACACCACACAAAGTGGTTTTTCACCCCTTGACAGGTCTTTGCATCCTAAGAAAGTCACCGGTGGAGGCGTTGAGGTTGGGACCTTGTTCTAATTCTGATGGATGGGAATACACAGACCAAAACATACTATCAATAAAGGGTACCAATTTCTGTTTACAAGCAGAGGGAGAAGGGAAGCAAGCAAAAATTGGGAACTTATGTTCAGCTTCCAATTCAAGATGGGAAATGATCTCTGATTCAAAGATGCATCTCTCAAGTCAAATCAACAACTCTTCTGGTGTGTGTCTTGATGTAGACACCAATAACATCATTGTCACCAACACTTGCAAATGTCTAAGCAAAGATAACACTTGTGAACCTGCAAGCCAATGGTTCAAACTTGTTGACAGCACAAGGAATTAA 1596 0.4474 MIPVVILRAVTVLLLCVTFLQSVKGFPLHTSDRWIVNESGKRVKLACVSWASHLDAAVAEGLSQQPLDFISKRIKSMGFNCVRLTWPLFLLTNDSLASLTVRNSFQNLGLLQSIHAVQAINPSIIDLPLIKAYQQEVVKSLGENDVMVILDNHLSQPGWCCSNMDGNGFFGDEYFDPDLWIKGLTKMATIFKGVPNVVGMSLRNELRGPKQNVNQWYSYMPKGAEAVHAANPDVLVILSGLNFDTDLSFIKKGALKLSFNGKLVLEVHWYSFTEGQAWTSQNANQVCGQVTEKKVRRAGFLLDQGLPLFVSEIGVDMRGSNVNDNRYLNCFMAFAAQHDLDWAWWTLDGSYYIKQGVVGMNEYFGILNSNWSEVRNTTVLQRISAIQLPFQGPGLSEATPHKVVFHPLTGLCILRKSPVEALRLGPCSNSDGWEYTDQNILSIKGTNFCLQAEGEGKQAKIGNLCSASNSRWEMISDSKMHLSSQINNSSGVCLDVDTNNIIVTNTCKCLSKDNTCEPASQWFKLVDSTRN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01159 531 Pfam Cellulase (glycosyl hydrolase family 5) 68 348 IPR001547 GO:0004553|GO:0071704
Spst11g01159 531 ProSiteProfiles Lectin domain of ricin B chain profile. 433 525 - -
Spst11g01159 531 SUPERFAMILY (Trans)glycosidases 27 379 IPR017853 -
Spst11g01159 531 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 12 530 - -
Spst11g01159 531 Gene3D Glycosidases 26 388 - -
Spst11g01159 531 Gene3D - 403 523 - -
Spst11g01159 531 Pfam Ricin-type beta-trefoil lectin domain 409 507 IPR000772 -
Spst11g01159 531 CDD RICIN 402 514 IPR000772 -
Spst11g01159 531 SUPERFAMILY Ricin B-like lectins 400 524 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01159 Spst-Chr11 35943677 35949478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01159 26 530 Glycoside Hydrolase AT1G13130 58.661 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01159 - - gmx:100816102 904.434