Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01142 ATGGGAAAGAAGAACGAGAATCAGAAAACGGGGCTAGGTCGAGCCCTCGTGAAGCAGCACAATCAGATGATTCTACAGAGCAAGGACAAGTCTCGCTTATACAAAAAGAAGGTTCTCGAATCCTTCACCGAAGTCTCCGACATCGACGCCGTCATCGAACAATCCCTCGAATCTCTCCCCGAACACGCCGCCGCCTCCACCACCATCATCAGCCTGGACCCTACCGAAATGACGCCTGAAGAAACGAGGAAGCATGAGGAGGCGCTCTACGCCAGCAGCCTCCGAGTTCCGCGCCGGCCGCCTTGGAATCCCAACATGTCCCCCGAGGATCTTCACGACAGCGAAACGCAAGCTTTTTTGGTTTGGCGTCGCAGTTTAGCGAGGCTTGAGGAGAATAAGAAGCTTGTTCTTACTCCGTTTGAGAAAAATCTTGACATCTGGAGACAGCTCTGGCGTGTTGTTGAGCGTAGTGATCTGCTTGTTATGGTTGTTGATTCGCGAGATCCACTGTTCTATCGTTGTCCAGACCTTGAGGCTTATGCACGTGAGGTTGATGAACATAAACGAACATTGCTTCTAGTTAATAAGGCAGATCTTTTACCTGCTTCTATCAGAGAGAAATGGGCAGAATATTTTCGAGCTCACGATATTCTCTTCATCTTCTGGTCTGCTAAAGCTGCTACCGCCACCCTGGAAGGCAAAAAGCTTGGTTCATCATGGGAGGATGATAACATGGGGAGAACTAACAGCCCAGACACAAAGATATATGGAAGGGATGAGCTATTGGCCCGTCTTCAATCAGAAGCAGAAGAGATAGTGGATAGGAGGAGGAATTCAGGCTCCTCTGATGCAGGGCCATCTGATTTTAAATCTACTGCTGAAAATACTGGTGGTAGTTCATCGCCGAGTAATGTAGTTGTGGGATTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATTAATGCTCTGGTTGGTCAAAAACGGACAGGTGTCACCTCTACCCCGGGGAAAACTAAGCATTTTCAGACATTAATTATTTCTGATAAGCTTACCCTCTGTGATTGTCCTGGATTAGTTTTTCCATCTTTCTCAAGCTCAAGATATGAGATGATTGCTTGTGGTGTGTTACCTATTGATAGGATGACTGAACACCGGGAATCTGTCCAAGTTGTAGCTGATAGAGTCCCAAGACATGTCATCGAAGAGATTTACAAGATTAGGCTTCCTAAACCTAAGCCATATGAGTCCCAATCCCGTCCCCCTCTAGCATCTGAACTTTTAAGAACATACTGTGCTTCCCGTGGCTATGTTGCTTCTAGTGGACTCCCGGATGAAACAAGGGCTACTCGTCAGATATTGAAAGATTACATCGATGGGAAGCTGCCTCACTATGAAATGCCTCCAGGTACATCAAACGAGGAACAAGCTTTGGAAGATCCCACCAGACATGACTCAGTTGACTTGCATGCATCAGATTCATCTGATATTGAAGATTCTTCAGAAGTTGAGAGTGAACTTGCACCAAATCTGGAGCATGTATTGGATGACCTCAATTCATTTGACATGGCTAATGGACTTGCTCCAAAAAGAACAACTCTTAAGAAGCCCAAGGCATCTCATAAACACCATAAAAAGCCACAGAGGAAAAAAGATCGTTCATGGAGGGCAGGAAATGATGATGCTGATGGGACGCCAGTTACAAGATTCATTCAGAAACCAGCCAATACAGGTTATCGGAAGGATTGA 1749 0.4591 MGKKNENQKTGLGRALVKQHNQMILQSKDKSRLYKKKVLESFTEVSDIDAVIEQSLESLPEHAAASTTIISLDPTEMTPEETRKHEEALYASSLRVPRRPPWNPNMSPEDLHDSETQAFLVWRRSLARLEENKKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEAYAREVDEHKRTLLLVNKADLLPASIREKWAEYFRAHDILFIFWSAKAATATLEGKKLGSSWEDDNMGRTNSPDTKIYGRDELLARLQSEAEEIVDRRRNSGSSDAGPSDFKSTAENTGGSSSPSNVVVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRMTEHRESVQVVADRVPRHVIEEIYKIRLPKPKPYESQSRPPLASELLRTYCASRGYVASSGLPDETRATRQILKDYIDGKLPHYEMPPGTSNEEQALEDPTRHDSVDLHASDSSDIEDSSEVESELAPNLEHVLDDLNSFDMANGLAPKRTTLKKPKASHKHHKKPQRKKDRSWRAGNDDADGTPVTRFIQKPANTGYRKD 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01142 582 CDD HSR1_MMR1 146 362 - -
Spst11g01142 582 Pfam 50S ribosome-binding GTPase 307 363 IPR006073 GO:0005525
Spst11g01142 582 FunFam Large subunit GTPase 1 367 468 - -
Spst11g01142 582 MobiDBLite consensus disorder prediction 477 497 - -
Spst11g01142 582 Gene3D - 366 468 IPR023179 -
Spst11g01142 582 MobiDBLite consensus disorder prediction 522 582 - -
Spst11g01142 582 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 147 362 IPR030378 GO:0005525
Spst11g01142 582 MobiDBLite consensus disorder prediction 534 552 - -
Spst11g01142 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 437 IPR027417 -
Spst11g01142 582 MobiDBLite consensus disorder prediction 280 301 - -
Spst11g01142 582 Gene3D - 146 363 IPR027417 -
Spst11g01142 582 FunFam Large subunit GTPase 1 146 363 - -
Spst11g01142 582 PRINTS GTP1/OBG GTP-binding protein family signature 353 368 IPR006073 GO:0005525
Spst11g01142 582 PRINTS GTP1/OBG GTP-binding protein family signature 307 327 IPR006073 GO:0005525
Spst11g01142 582 MobiDBLite consensus disorder prediction 461 507 - -
Spst11g01142 582 MobiDBLite consensus disorder prediction 272 301 - -
Spst11g01142 582 PANTHER LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED 1 556 IPR043358 GO:0003924
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01142 Spst-Chr11 35737495 35740756 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01142 K14539 - gmx:100817523 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01142 11 35737495 35740756 Spst11g01142 11 35737495 35740756 ECH