Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01108 ATGGCTAAGAGCTCATTCAAGATGGAACACCCTCTTGAAAGGAGACAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGACAGAATTCCAGTAATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTATCTTGTTCCTGCCGATTTGACTGTTGGGCAGTTTGTGTACGTGGTGAGGAAGAGAATCAAGCTGAGCCCTGAGAAGGCCATCTTCATTTTTGTCAAGAACATCTTACCACCAACTGCGGCAATGATGTCTGCAATATATGAGGAAAACAAGGATGAAGATGGATTCCTATATATGACTTACAGTGGAGAGAACACATTTGGGGTTGTGTTCTGA 363 0.427 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGVVF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01108 120 CDD Ubl_ATG8 12 114 - -
Spst11g01108 120 FunFam Autophagy-related protein 1 117 - -
Spst11g01108 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Spst11g01108 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 -
Spst11g01108 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Spst11g01108 120 Gene3D - 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01108 Spst-Chr11 35452560 35454033 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01108 K08341 - gmx:100301895 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01108 11 35452560 35454033 Spst11g01108 11 35452560 35454033 ECH