Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01106 ATGAACAACGGTTACACGGTGCGCGTGCGGGTGGCATTCACCGTCGCAACAGTAGCAGCCGTAGCTGCTATCATGTCCATCTTCTCCGCCGCGCGAAGGCGCAAACAACGTCAGTCCTGTTCGGGTTCGTGCTATTTGCATTCTGAACAGAAACAACAGAGTGCGTTCAAGCGCGTATTAGCAGACAATTCCTACACTCCATTCAAGCACCTCAGCAACAACCAGCTAGAAGGTTATAAAGATGAATCTGGGATTAGTTGTTTTCCTGCAGAGAATGCTTCGAATTCGCATCCGTTTGAAGCGGAGATTACAGCATTGTTGAAAACTCCTCAGCCTGAAATTGAATTTGGAACTGAGATTGTGGACTTCAAAATGAAGAATTCATATGTTTGGGTTCACACCGAGACGCAGTTAAAGGAATTAGTTGATGTGTTGAGCGAAGAGAGGTTCTTTGCTGTGGATACAGAGCAACATAGCTTACGATCTTATCTAGGCTTTACAGCATTAGTTCAGATTTCTACGCGGGAGAAAGATTATTTGGTTGATACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCAGTTTTTGCCAATCCTTCAATTTGTAAAGTGTTCCATGGGGCAGACAATGATATAATCTGGCTACAGAGGGACTTCCACATATACGTTGTTAATCTATTCGATACTTCAAAGGCATGCGAGGTGCTGTCAAAACCACAAAAATCACTTGCTTATCTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCTCTCTCAGAAGAAATGTTACATTATGCCCGAACAGATGCACACTTTCTGTTGTATATTGCAAATTGTATGATCAATGAACTGAAACAACTGGACAACGAAAGCTCTTGTTCCGGTGACAAATTCCATTTTGCTCTGGAGGCTAGTAAGCGATCAAACATGATCTGTTTACAACTTTTCACGAAAGAGATTGAAGCTTATCCTGGAGAATCTTCTGCATTATCATTATTTTCCCGTCAAGTGAGCAGTCATGGTTGTCCATCTATTTCAAATGAAACCCAGAATATTGTGAGGCAACTATGCGCATGGAGAGATCTGATGTTTGCAAATTAA 1137 0.423 MNNGYTVRVRVAFTVATVAAVAAIMSIFSAARRRKQRQSCSGSCYLHSEQKQQSAFKRVLADNSYTPFKHLSNNQLEGYKDESGISCFPAENASNSHPFEAEITALLKTPQPEIEFGTEIVDFKMKNSYVWVHTETQLKELVDVLSEERFFAVDTEQHSLRSYLGFTALVQISTREKDYLVDTIALHDFMGILRPVFANPSICKVFHGADNDIIWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSEEMLHYARTDAHFLLYIANCMINELKQLDNESSCSGDKFHFALEASKRSNMICLQLFTKEIEAYPGESSALSLFSRQVSSHGCPSISNETQNIVRQLCAWRDLMFAN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01106 378 CDD Rrp6p_like_exo 125 303 - -
Spst11g01106 378 SMART 35exoneu6 129 297 IPR002562 GO:0003676|GO:0006139|GO:0008408
Spst11g01106 378 Pfam 3'-5' exonuclease 129 296 IPR002562 GO:0003676|GO:0006139|GO:0008408
Spst11g01106 378 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 39 375 IPR045092 GO:0000175|GO:0000467
Spst11g01106 378 Gene3D - 48 334 IPR036397 GO:0003676
Spst11g01106 378 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 50 334 - -
Spst11g01106 378 SUPERFAMILY Ribonuclease H-like 51 300 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01106 Spst-Chr11 35407126 35411209 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01106 K12951 - gmx:100791485 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01106 11 35407126 35411209 Spst11g01106 11 35407126 35411209 ECH