Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01025 ATGGCTTCACAACACGAAAATGGGTTGAATGTTTACCCGATTCCTATTGGGGTGGAGACAACAATGGCTTCACAACAAGAAAACGGGTTGAGTGTTTGCCGGATTCCTATTGGGGTCGAGACAACAGTGGCTTCGCAACACGAAAACAGGTCTACGGACCCGAGTCCAATTGGGATGGAGACCCAGGAAGCAGAGACAGAAAAGTTTTCGACTTTGGGTTGTGCTGTACCTATTGAGGAAGCTGTCGAGAAGATCAATTTGTTGGGTTCCCCTCTTTCAATTGAGGAGAACAGTGATAAGGATGATAGCGGAAGTGATAGTGATACTAAAAGTGGAAGTGAAAATTCAGGGTCTGAGAGATCTGATTCTGGTAGTGGAAGCAGTAGTAGTAGCGGCTGTAGCAGTAGCGATAACGAAGAGGAAGAAGAGGAAGGTGATGATGATGACGACAAGGGAGAAGTTGAAGAAGGCGAGATAAGTAGTTCTGATGAAGAAAAGATGGTTAGTTGGAGCATGGTTGATGATGATGTTGATCATGATGATGAAGATGGTGATGCAGGAGTTGGACCCATCAGGTCAAAGAACGAGCTTCAGAATCTGCCTGTTGTTCCTCCTGTCAATGCGGCTTTAGAACCACACCATGAAATGTTGCCAGTTGGAATTGTTACTTCGATTCTTGGTGCTCAAGTCATTGTGGAAGGAGTGAAGAAGCATGACCCTCTTAATGAGGGTTCTATTCTTTGGTTGACTGAAAGCCGAAAACCACTAGGTTTAATTGATGAAATCTTTGGACCAGTCAAGAACCCTTATTATATTGTGAGATACAATTCTGACAGTGAAGTTCCTGCAGGGATCAATGGGGGAACCTTGATCTCGTTTGTTCCAGAATTTGCTGATCATGTGCTTAATAACCAGGATCTTTATAAGAAAGGGTACGATGCATCTGGTGCGAATGATGAAGAGGTGTCTGATGAAATGGAGTTTTCAGATGATGAGAAAGAGGCTGAATACAAGAGAATGCAAAGAACGACAAAAAGAGGTGTAAATGATCAAAACCATGGCAAGAAGAAAAACAACAGAAAGAAATTTTCACCTAAAGAGCATCATGCGGCACCTACCATCCCTGCTGCTCCTGCTGCACCATTGCTTACTCATGGAAATTGTCCTCCTTTTCCAGGCACTGGACAAGCACTTTTGGGGGGAACTGCCACAGTTCAATCATTTCTCCCCTTAAATTCAGCGCCTAACTTTGCTACAAATGGAATTTGGACAAACGGAACATTTCCACAGCAGCCTCAGACTGGGTTGCTTCCTAATGGTTTTCCTACAAATGGCATATCATGGTACCCACAAAACACTCAAATTCGTCCTCAGCTGCCAATGCCAGGAATCCCATTTCAACAGCAATTACATGCCAATCAGGGTTCTCTTTCCACAAATATGCTAACTGGGATGCAGCCCAATATGTTTGCTCAATACATATATGCTACAGGGCTTGTTGGTCAAAACCAAATGCCATATGGGATGGGGTCACCCTTCCCTCAGATTCAGCCACCTGCACAACAGGGATTTCCATCCCCTGGATTTCATTCAGAAAGAAGCCTTAATTTGCATTCTAATACCACTTCTGGCACCCCCCCTCAATTTCATCCACGCCCATCTGGTAATCGTGGTAGAAAAACATTTCGTGGTGCAGGTAGGAAAAGGTGGCGACCAGCCAGGTGA 1725 0.4446 MASQHENGLNVYPIPIGVETTMASQQENGLSVCRIPIGVETTVASQHENRSTDPSPIGMETQEAETEKFSTLGCAVPIEEAVEKINLLGSPLSIEENSDKDDSGSDSDTKSGSENSGSERSDSGSGSSSSSGCSSSDNEEEEEEGDDDDDKGEVEEGEISSSDEEKMVSWSMVDDDVDHDDEDGDAGVGPIRSKNELQNLPVVPPVNAALEPHHEMLPVGIVTSILGAQVIVEGVKKHDPLNEGSILWLTESRKPLGLIDEIFGPVKNPYYIVRYNSDSEVPAGINGGTLISFVPEFADHVLNNQDLYKKGYDASGANDEEVSDEMEFSDDEKEAEYKRMQRTTKRGVNDQNHGKKKNNRKKFSPKEHHAAPTIPAAPAAPLLTHGNCPPFPGTGQALLGGTATVQSFLPLNSAPNFATNGIWTNGTFPQQPQTGLLPNGFPTNGISWYPQNTQIRPQLPMPGIPFQQQLHANQGSLSTNMLTGMQPNMFAQYIYATGLVGQNQMPYGMGSPFPQIQPPAQQGFPSPGFHSERSLNLHSNTTSGTPPQFHPRPSGNRGRKTFRGAGRKRWRPAR 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01025 574 MobiDBLite consensus disorder prediction 332 354 - -
Spst11g01025 574 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 188 294 - -
Spst11g01025 574 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 65 527 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Spst11g01025 574 MobiDBLite consensus disorder prediction 109 135 - -
Spst11g01025 574 MobiDBLite consensus disorder prediction 43 68 - -
Spst11g01025 574 MobiDBLite consensus disorder prediction 510 574 - -
Spst11g01025 574 MobiDBLite consensus disorder prediction 522 550 - -
Spst11g01025 574 MobiDBLite consensus disorder prediction 89 196 - -
Spst11g01025 574 Pfam Gar1/Naf1 RNA binding region 218 283 IPR007504 GO:0001522|GO:0042254
Spst11g01025 574 SUPERFAMILY Translation proteins 216 279 IPR009000 -
Spst11g01025 574 Gene3D Probable tRNA pseudouridine synthase domain 188 293 IPR038664 -
Spst11g01025 574 MobiDBLite consensus disorder prediction 314 372 - -
Spst11g01025 574 MobiDBLite consensus disorder prediction 136 160 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01025 K14763 - gmx:102660668 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01025 11 34453711 34456243 Spst11g01025 11 34453711 34456243 ECH