Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00788 ATGCAGGTTTTGGATGTAGTGAAGAATATAGACATCATGAAGCTTTCATCTGCAGAATCTATTGCAGTTATATTCCAATCATTAGGCAGGCTCCAGCTGGAATCTGTTGCAAAAGATATCCTTTTGGATTTCAGATCGTGTGAAGGATCAAGTATTATCTTCCTCGATAAATTTGTGCCATGTAAGGTTAAGGATTTTAATGATGAATTCTTACGTAATGCAGATCAGGATGCAGATAATATTTCAAACTTCATTGCTAGTTATGCTGTTAGCATTCCAAATTCAGCGGTTGAGGATATCATCCCAAAGGTCAATGCTATGCATGAATTACTGGGAGTGTTGCCTTCATCCGCATCATATGAAAAGCTCATTTTGCATTGCTGTGGTTTAGACAAGAGAGAAAGTGAGATTGCAAGGAGAAATTATTTCTTGGAGACTACCAGAGCAAGTGTGAGAGTGGTTCTGCAGGAACTGGGTCAGACAGACTATGACCCCCACAATAACTTGGATGAGCATTGGGTGGTCACCGCTCTGGATATTGTTGAAACAATGTGTGATGCTGGCTTTAACTTGTCAACTCAATTGTTACAATTAATATTACAGACGTGTGAGAAGTCTCATGAATATAATTTGATTGATGATTTAAGAATTGAATTTGCATGTGCATACAAGATAATTGATGACTTAGAGGAGATGAGTTTCAAACCTACGACAAACATGTACAATGCTATAATGGCGGGATATTATCGGGAGAAGAACATCAGTGGTGGGCTGAGAGTCCTCAAGTACATGCAAGGTGCCAATGTAAAACCTGATTCTCAGACTTTCTCCTATTTGATTAACAATTGTGAAACGGAAGAGGATATTATCAAGATAGGTTGGCAGAATCAATGGAGGTGGTGCAATGTTGCTTTGGTGACCAGGAGATGGCTTGTGGACAACACATGCCTAGTTGAGCCATACAAAGAAGCTGCACGTGGAACAATGACCACTTTTTATTTTGAAGAAATGAACCAATCTGGAGTCCCACCAACAAAACAAATTTTTATGGCCCTTATTGATTCGTATGCAGATTGTGGAAAATTGGAGAAGGCAAAACAGGTAGTTTTGGATCCAAAAATACCAAACCAGAGCTTAAATGAAATCAAGAGTGTTCTTGTCTCAGCTCTTGCATCACATGGGCAATTGTCCGAGGCTCTTCTTGTCTATGAACAGATTAAGAAATGTGGACATAATTTGGAGCCAAAAGCCGCAATAGTTCTGATTGAAGTGTTGGCTCAACACAATGAGGAGGTAGATAGACTGCTACTTCTACTAAAGGAAGTGAGTGATCTAGACTATTGGGTTGATGGCTGCTTCAAGGTCATCAAGTACTGTACATGGAACAACAATATAAGTTCTGCTATTCTTTTGTTCAAACAACTAAAGGATAAGTTTGAAAATGATGAAATGGTAATGGAAGGCCTTTTTGACACGGTATTTTATGAAATTGCAACATCTGAGTCCACTCATTTACAGATTGGCCTGGACTTGCTTCGGACAATCAAGGATGAGCTTGGCCTTATGCCGTCACGGCAATGTCTTGATTTTCTTCTAAGTGCTTGTGTCAATGCCGGATATTTGAACAGTGCCCGCATGATCTGGGGAGAGTACGAGATTGCTGGGTTTCCTTACAATGTATTAAGTTACTTGCGAATGTATCAGGCACTTTTGGCAGCAGGAGATGCTAGATCTGCTTACCATATGCTTAAGAAAATTCCACGAGACGATGCCGAGGTTCGTTCTATCATCATAGCATGTCAAGAAACATATGGTGGTGTTGGTTATGTAGTAAAGAAGAAAAAGCGAGTTAAAAGGAAAGAAAGAAAAGAGCATGACCAGAATACTAATTCCAGTGATACGTGA 1905 0.3969 MQVLDVVKNIDIMKLSSAESIAVIFQSLGRLQLESVAKDILLDFRSCEGSSIIFLDKFVPCKVKDFNDEFLRNADQDADNISNFIASYAVSIPNSAVEDIIPKVNAMHELLGVLPSSASYEKLILHCCGLDKRESEIARRNYFLETTRASVRVVLQELGQTDYDPHNNLDEHWVVTALDIVETMCDAGFNLSTQLLQLILQTCEKSHEYNLIDDLRIEFACAYKIIDDLEEMSFKPTTNMYNAIMAGYYREKNISGGLRVLKYMQGANVKPDSQTFSYLINNCETEEDIIKIGWQNQWRWCNVALVTRRWLVDNTCLVEPYKEAARGTMTTFYFEEMNQSGVPPTKQIFMALIDSYADCGKLEKAKQVVLDPKIPNQSLNEIKSVLVSALASHGQLSEALLVYEQIKKCGHNLEPKAAIVLIEVLAQHNEEVDRLLLLLKEVSDLDYWVDGCFKVIKYCTWNNNISSAILLFKQLKDKFENDEMVMEGLFDTVFYEIATSESTHLQIGLDLLRTIKDELGLMPSRQCLDFLLSACVNAGYLNSARMIWGEYEIAGFPYNVLSYLRMYQALLAAGDARSAYHMLKKIPRDDAEVRSIIIACQETYGGVGYVVKKKKRVKRKERKEHDQNTNSSDT 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00788 634 Gene3D Tetratricopeptide repeat domain 321 450 IPR011990 GO:0005515
Spst11g00788 634 Gene3D Tetratricopeptide repeat domain 452 633 IPR011990 GO:0005515
Spst11g00788 634 Coils Coil 425 445 - -
Spst11g00788 634 PANTHER OS02G0132600 PROTEIN 71 132 - -
Spst11g00788 634 Pfam PPR repeat 385 410 IPR002885 -
Spst11g00788 634 Pfam PPR repeat 349 368 IPR002885 -
Spst11g00788 634 NCBIfam pentatricopeptide repeat 240 273 IPR002885 -
Spst11g00788 634 Pfam PPR repeat family 236 283 IPR002885 -
Spst11g00788 634 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Spst11g00788 634 Gene3D Tetratricopeptide repeat domain 94 304 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00788 Spst-Chr11 31691452 31704274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00788 236 442 Glycosyltransferase AT1G05670 21.801 7.81e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00788 - - gmx:100787964 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00788 11 31691452 31704274 Spst11g00788 11 31691452 31704274 ECH