Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00615 ATGGCCACACTCTTCGACTCCATCGCCGTCGTTCGCCTCCCTTCTTCCGCTTTCTCCCCCGTCGCCGCCCGCCGCGCCTCCGTCAAGCTTCCGCTCTGCGTCGGCCTCAGACTTCGACCCGCCGCACGCTTCGTCGCAGCCTCCGCTCCCAGAATCGCCCCACGCGCCGCGCGCCTTGTGTGCGAGGCTCAGGATACCGCCCTCGATGTGGCTCCTATTACTGATGCAAATTGGCAATCCCTTGTCCTTGAATCTGATTCTGCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGCCCCTGCCGAATGATTCACCCTATAATTGATGAGCTTGCAAAGCAATATGCTGGGAAGCTCAAATGCTACAAACTCAACACTGATGAGAGCCCTTCAACTGCAACTCGGTATGGAATTCGAAGCATCCCCACTGTTATGATCTTCAAGAATGGTGAGAAGAAAGATACAGTCATTGGAGCTGTGCCCAAGTCAACATTGACCACAAGCATAGAAAAATTCGTTTGA 522 0.5402 MATLFDSIAVVRLPSSAFSPVAARRASVKLPLCVGLRLRPAARFVAASAPRIAPRAARLVCEAQDTALDVAPITDANWQSLVLESDSAVLVEFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00615 173 NCBIfam thioredoxin 74 172 IPR005746 GO:0015035
Spst11g00615 173 ProSitePatterns Thioredoxin family active site. 90 108 IPR017937 -
Spst11g00615 173 SUPERFAMILY Thioredoxin-like 66 172 IPR036249 -
Spst11g00615 173 Pfam Thioredoxin 70 170 IPR013766 -
Spst11g00615 173 FunFam Thioredoxin 64 173 - -
Spst11g00615 173 PANTHER GEO12009P1 64 172 - -
Spst11g00615 173 Gene3D Glutaredoxin 70 173 - -
Spst11g00615 173 PRINTS Thioredoxin family signature 97 106 - -
Spst11g00615 173 PRINTS Thioredoxin family signature 89 97 - -
Spst11g00615 173 PRINTS Thioredoxin family signature 137 148 - -
Spst11g00615 173 CDD TRX_family 76 170 - -
Spst11g00615 173 ProSiteProfiles Thioredoxin domain profile. 61 173 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00615 Spst-Chr11 28280335 28281889 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00615 K03671 - gmx:100818054 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00615 11 28280335 28281889 Spst11g00615 11 28280335 28281889 ECH