Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00547 ATGAAAGAAACACAGCGTTTGCTCAGTGAGCCTGCACCTGGAATTAGTGCTTCCCCATCTGAAGACAACATGAGACATTTCAATGTGATGATCCTTGGGCCGACCCAATCGCCTTATGAAGGAGGAGTGTTTAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTTCGGTTTCTAACAAAAATATATCATCCAAACATTGATAAGCTTGGCAGAATTTGTCTTGACATTCTGAAAGATAAGTGGAGTCCTGCTCTTCAGATTCGTACTGTTCTATTAAGCATTCAAGCTCTATTGAGTGCACCAAACCCAGATGATCCACTTTCTGAGAACATTGCCAAACACTGGAAATCTAATGAGGTCGAGGCTGTTGAAACAGCGAAGGAATGGACCCGATTATATGCTAGTGGCGCGTGA 432 0.4259 MKETQRLLSEPAPGISASPSEDNMRHFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEVEAVETAKEWTRLYASGA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00547 143 MobiDBLite consensus disorder prediction 1 21 - -
Spst11g00547 143 FunFam Ubiquitin-conjugating enzyme E2 36 1 142 - -
Spst11g00547 143 CDD UBCc 1 136 IPR000608 -
Spst11g00547 143 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23 127 - -
Spst11g00547 143 Gene3D Ubiquitin Conjugating Enzyme 1 142 IPR016135 -
Spst11g00547 143 Pfam Ubiquitin-conjugating enzyme 1 135 IPR000608 -
Spst11g00547 143 SMART ubc_7 1 141 - -
Spst11g00547 143 SUPERFAMILY UBC-like 1 141 IPR016135 -
Spst11g00547 143 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 68 83 IPR023313 -
Spst11g00547 143 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 141 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00547 Spst-Chr11 27456523 27462337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00547 1 108 Miscellaneous Gene Families AT3G17000 28.070 2.22e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00547 K10580 - sly:101266538 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00547 11 27456523 27462337 Spst11g00547 11 27456523 27462337 ECH
Spst5g01309 5 26858151 26862614 Spst11g00547 11 27456523 27462337 PCT