Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00300 ATGGCCCAAGAACCCCAAAATCCACCTCCCCCTGCCCAGGAACTCTCTCCCCTCGTCGACCCCGTTCCTCTCCACGACCCGCCAACTACCCAACCTCAAGCCGAATCTGAAGTGAAACCACCGGCCACCGAAGCTGAACCCGAAGACAAGGCAGGAGTAGTCATCGAAGAAGTGGTGGGGGAAGCAGAGAAGGCCCCCAGCGCTGTCGAAGACAAGATTTCCGAATCGGTTTCGTTCAAGGAGGAGACCAACGTGGTTGGCGACCTCCCCGAGGCTCAGAAGAAAGCCCTTGATGAGCTCAAGAAGCTTGTTCAAGAATCGCTTAACAACCATGACCTAACTGCTCCCAAACCCCCACCACCCGAACCAGAGAAGAAGAAACCAGACATCGTCAAGGAGCCAGAAGTCGCAGCAGGAGAGGCAGAGAAGAAGGAACCTGAAGTGGCTGCCGAAGAAGCGGAGAAGAAGGAAGTCGAAGTTAAAGAAGAGAAGAAGGAAGTCGAAGTTAAAGAAGAGAAGAAGGAAGTCGAAGTTAAAGAAGAGAAGAAGGATGTAGAAGTGATAGAAGAGAATAAGGACGTTGAAGTGACAGAAGAGAAGAAGGAAGTTGAAGTGACAGAAGAGAAGAAGGAAGTTGAGGTTACAGAAGAGAAGAAGGAAGTTGAGGTTACAGAAGAGAAGAAGGAGGTTGAGGTTATAGAAGAGAAGAAGGAGGTTGAGGTTACAGAAGAGAAGAAGGAGGTTGAGGTTACAGAAGAGAAGAAGGAGGCGGAAGAGACGGTGGCGGTTAAGGAAGTTGGGCCGGAGGAAGTTGAGATATGGGGAATTCCGCTGCTGGCGGATGAGAGGAGCGATGTGATTCTGCTGAAGTTTCTGAGAGCGAGGGATTTCAAGGTGAAGGAAGCCTTCAGCATGCTGAGGAACACCGTGCGTTGGCGGAAGGAATTCGGAATCGACGCTCTTGTCCTGGAAGATCTTGGAAGCGATTGGGACAAGGTGGTGTTCACCGACGGACACGACAAACAAGGGCACCCCGTGTGCTACAACGTGTTTGGTGAGTTTGAGAATAAGGAGTTGTACAACAAGACCTTTTCGGACGAGGAGAAGCGGAACAAGTTCATCAGGTGGAGGATTCAGGTTCTGGAGAAGAGCGTGCGAAGCCTTGACTTCTCTCCCACCGCCATCTCCACCATTGTGCAGGTCAACGACCTCAAGAACTCTCCTGGACTCGGCAAGAGGGAACTCAGGCAAGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCCGAGTTTGTAGCCAAGCAGATATTTATCAATGTTCCATGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCTTTCTTCACACAGAGGACCAAGAGCAAATTTGTGTTTGCTGGGCCATCCAAGTCTGCCGAAACCCTTTTCAAATACATTGCTCCGGAGCTGGTTCCTCTTCAATATGGTGGACTGAGCAGAGAGGGGGAACAGGAATTCACCACTGCTGATCCTGCTACAGAGGTCACAATTAAACCCGCATCCAAACATGCTGTTGAGTTCCCAGTTTCTGAGAAAAGCCATCTAGTTTGGGAAATCCGAGTGGTAGGTTGGGATGTGAGCTACGGAGCTGAGTTTGTGCCCAGCGCTGAGGATGGATACACTGTCATTGTGCAGAAGAACAGGAAAATTGCTCCCGCTGATGAGACCGTAATCAATAACGGTTTCAAAACTGGTGAACCTGGCAAGGTTGTACTCACCGTAGATAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCCAAGACCAAGCCCATCGCAGAGTGA 1833 0.5014 MAQEPQNPPPPAQELSPLVDPVPLHDPPTTQPQAESEVKPPATEAEPEDKAGVVIEEVVGEAEKAPSAVEDKISESVSFKEETNVVGDLPEAQKKALDELKKLVQESLNNHDLTAPKPPPPEPEKKKPDIVKEPEVAAGEAEKKEPEVAAEEAEKKEVEVKEEKKEVEVKEEKKEVEVKEEKKDVEVIEENKDVEVTEEKKEVEVTEEKKEVEVTEEKKEVEVTEEKKEVEVIEEKKEVEVTEEKKEVEVTEEKKEAEETVAVKEVGPEEVEIWGIPLLADERSDVILLKFLRARDFKVKEAFSMLRNTVRWRKEFGIDALVLEDLGSDWDKVVFTDGHDKQGHPVCYNVFGEFENKELYNKTFSDEEKRNKFIRWRIQVLEKSVRSLDFSPTAISTIVQVNDLKNSPGLGKRELRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFFTQRTKSKFVFAGPSKSAETLFKYIAPELVPLQYGGLSREGEQEFTTADPATEVTIKPASKHAVEFPVSEKSHLVWEIRVVGWDVSYGAEFVPSAEDGYTVIVQKNRKIAPADETVINNGFKTGEPGKVVLTVDNQTSKKKKLLYRSKTKPIAE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00300 610 SUPERFAMILY CRAL/TRIO domain 334 494 IPR036865 -
Spst11g00300 610 PRINTS Cellular retinaldehyde-binding protein signature 484 493 - -
Spst11g00300 610 PRINTS Cellular retinaldehyde-binding protein signature 287 309 - -
Spst11g00300 610 ProSiteProfiles GOLD domain profile. 474 605 IPR009038 -
Spst11g00300 610 SMART sec14_4 327 495 IPR001251 -
Spst11g00300 610 Pfam CRAL/TRIO domain 332 492 IPR001251 -
Spst11g00300 610 CDD SEC14 329 493 IPR001251 -
Spst11g00300 610 SUPERFAMILY CRAL/TRIO N-terminal domain 77 324 IPR036273 -
Spst11g00300 610 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 323 498 IPR001251 -
Spst11g00300 610 MobiDBLite consensus disorder prediction 41 78 - -
Spst11g00300 610 Coils Coil 198 261 - -
Spst11g00300 610 Gene3D - 229 521 IPR036865 -
Spst11g00300 610 Coils Coil 148 191 - -
Spst11g00300 610 SMART CRAL_TRIO_N_2 284 309 IPR011074 -
Spst11g00300 610 MobiDBLite consensus disorder prediction 1 173 - -
Spst11g00300 610 PANTHER PATELLIN-1 174 607 IPR044834 GO:0008289
Spst11g00300 610 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 508 602 IPR036598 -
Spst11g00300 610 MobiDBLite consensus disorder prediction 1 28 - -
Spst11g00300 610 MobiDBLite consensus disorder prediction 118 173 - -
Spst11g00300 610 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00300 Spst-Chr11 10819202 10821288 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00300 288 487 Acyl Lipid Metabolism Gene Families AT1G55840 28.571 2.50e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00300 K19996 - gmx:100794623 629.402