Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00291 ATGGAAGACATTGAAGATTTGCTGATTGGAAACAGAAGCACAACTCCACCGGGCTTCCGTTCGCCGTTACCGGCGGCTGTGGGCGTTGGCGTTGGGAGCAAACGGAATATACTCTCTTCTTCGCCTTCTCCTGCATTAAGACCTTTGGCTGCTCCCATAACCAGGCAAGTGTTGTTTTGTGCTGTGTTACTCATTCTTTCCTTGAAATCCCCAAGTCAATCTGCCATGGATACCATCATAACAAAAGGAAAATCTTTAAATAAACCTCTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGAAATTTGAAAGAGCTGGAAGGCATCAGCATAGTTGGAGTCCAGCAAATTGATCGTGTCGTTGAAATTGTAGAGGAGACTTTAAAGGGTCATGAAGTGCGCCTTTTGACCCGTAAGAAATTGCCAGCACTTGACCTTCCAAAGTTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTACACGATTGATATCCTTGTTGACCGTGTAAAATCTGTCATATCTGATGGAGTCAAAGAGATATGGCTTAGCAGTGAGGACACTGGAGCATATGGTCGTGACATTGGCGTCAATCTTCCAACTTTATTGAATGCCTTAGTAGCAGAACTACCAGCTGATGCAAGCACAATGCTATGTATTGGAATGACCAATCCACCTTATATCCTTGAACACTTGAAAGAGATAGCCGAGATTTTGCGGCATCCTTGTGTGTACTCTTTTCTGCATGTACCAGTTCAGTCTGGAAGTGATACTATTTTGAGTGCAATGAATCGGGAATATACTGTGGATGAGTTCAGGACTGTTGTAGAAACTCTGACTAAGCTTGTGCCAGAGATGCACATTGCCACTGATATAATATGTGGATTTCCTGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTTAAAAGAAGAAGCCGAGAACTGACAAATGTCTTTGAATCATTCACAACATACTCTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGATATTGCATCTGATGGAATTCACTTGATGGTCTGTTTTTGGGAAGTAATTGAGACAATCGACCGTGTAAGTGGCAATAAAGTTCTAAACAAGTTGCTTCCTGATCGGGATTTGCCTTCTCTTTGCGGTATCTCAGCCAAGGCTGGAGGATTCTCAGAAGAGCCAGAATCTTGTGCCTGTGGAAGTGACGTCTGTTGTGGTATTGATAAGAGTGATAATTCAAGAGGCACGGCAGTGCCACAGAACCAAAGCAAAAAAAGTTTCATTGGATGGATGCTGAGGAAGCGGGAGCATCTGCACAAAAAGGTTGAGAGCGAGCTTGCCTCGGGATCTGTTAAAAAACATGATGGAAGGATGAAGTGGGACTTCGTAGATAATATTCTTTTGAGTGAAATATCTATCAGCATCCTAACTATTATTGCTCTAGTAGCAGCTCTTACGTTCAGAGTTTTTTGGTCCAAGTAA 1557 0.4297 MEDIEDLLIGNRSTTPPGFRSPLPAAVGVGVGSKRNILSSSPSPALRPLAAPITRQVLFCAVLLILSLKSPSQSAMDTIITKGKSLNKPLVVAGCVPQGSRNLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKKLPALDLPKLRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDILVDRVKSVISDGVKEIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLCIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVDEFRTVVETLTKLVPEMHIATDIICGFPGTPAARMKKVPSNVVKRRSRELTNVFESFTTYSGMEGKVERIWITDIASDGIHLMVCFWEVIETIDRVSGNKVLNKLLPDRDLPSLCGISAKAGGFSEEPESCACGSDVCCGIDKSDNSRGTAVPQNQSKKSFIGWMLRKREHLHKKVESELASGSVKKHDGRMKWDFVDNILLSEISISILTIIALVAALTFRVFWSK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00291 518 SFLD B12-binding domain containing 102 328 - -
Spst11g00291 518 MobiDBLite consensus disorder prediction 1 20 - -
Spst11g00291 518 ProSiteProfiles Radical SAM core domain profile. 150 391 IPR007197 GO:0003824|GO:0051536
Spst11g00291 518 SMART MiaB 154 377 IPR006638 GO:0003824|GO:0051536
Spst11g00291 518 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase isoform X2 154 320 - -
Spst11g00291 518 Pfam Radical SAM superfamily 161 324 IPR007197 GO:0003824|GO:0051536
Spst11g00291 518 SUPERFAMILY Radical SAM enzymes 143 347 - -
Spst11g00291 518 SFLD Radical SAM 102 328 IPR007197 GO:0003824|GO:0051536
Spst11g00291 518 Gene3D tm_1862 like domain 152 321 IPR023404 -
Spst11g00291 518 ProSitePatterns Methylthiotransferase radical SAM domain signature. 158 178 IPR020612 GO:0051539
Spst11g00291 518 PANTHER RADICAL SAM PROTEINS 67 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00291 Spst-Chr11 10678952 10683125 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00291 K15865 - gmx:100798865 758.444