Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00285 ATGAGACCGAGCAAGATTAGGGGTCTACAGTGGGTGTTGAGGAAGATGGATTATAGTTTCAACCTCCATGCTAACACTGTGATGCATAATGTGGTTATAAGGCTGTGTTGCAAGAAAGGTGACATTGGAACGGTTGAGAAGTTGACCAGGGAGATGAGTTTGAATGGTCTTTATCCTAATCTTATTACATACATGGCAATAATCGAGGGATTCTATAATGCGGGTCGATCAGAGGATGCTTACTTTGTGCTTAAGGTTATAGAGCTGGAAGAAGCAAAGAATCTCTTCAAGGAAATACTTTCTAGTGATGTCAGACCAAATACTTTGGCATCTAGCCTTTTGCTAAAGGAGCTTTGTATGAAGGACCGGGTATTGGATAGGTTCTACTTGCTTGAAGCAATTGAGATTAAGGGATGTTTGTCTTCCATTGACTCTGATATTTATTCTATTATTTTAATTGGGCTTTGTCAAAGGAGCCACCTGACGGAGGCCACAAAGTAG 501 0.4072 MRPSKIRGLQWVLRKMDYSFNLHANTVMHNVVIRLCCKKGDIGTVEKLTREMSLNGLYPNLITYMAIIEGFYNAGRSEDAYFVLKVIELEEAKNLFKEILSSDVRPNTLASSLLLKELCMKDRVLDRFYLLEAIEIKGCLSSIDSDIYSIILIGLCQRSHLTEATK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00285 166 NCBIfam pentatricopeptide repeat 27 60 IPR002885 -
Spst11g00285 166 Gene3D Tetratricopeptide repeat domain 87 166 IPR011990 GO:0005515
Spst11g00285 166 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 13 165 - -
Spst11g00285 166 Gene3D Tetratricopeptide repeat domain 2 86 IPR011990 GO:0005515
Spst11g00285 166 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Spst11g00285 166 Pfam PPR repeat family 25 72 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00285 Spst-Chr11 10232163 10233044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00285 24 166 Glycosyltransferase AT1G05670 26.573 1.96e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00285 - - gmx:100776252 139.428