Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01547 ATGGAAACAAATTTAGCTGAAAATATTGTGATTGTGGGGGCTGGAATTGCTGGCCTTACAACAGCCTTAGGACTTCACAGGTTGGGTATCCGAAGTTTGGTGTTGGAATCTTCAGATTCTTTGAGGGTCACTGGGTTTGCTTTGTCAATATGGAACAATGCTTGGAAGGCTTTGGATGCTGTTGGTGTCGGAGACATCCTCCGCCACCAACATCTCCAGCTCAATGGGATCGTCACTACTTCATTGATTACAGGGCAACAAACATCAGCCATGCCTTTCAGAGCAACAGGAAACCAGCAGGATGTCGAAATCCGTTGTGTTAAAAGGAAGTCAATGTTAGAAGCCCTTGTCAATGAAATTCCAAGAGACACCATCAGATATTTGTCGAAAGTTGTTGCCATCGAGGAATTTGGCTTCTATAAGATAGTCCATCTTGACGATGGGACAATCATCAAAACCAAGGTGTTGATTGGGTGTGATGGAGTGAACTCCTTGGTGGCAAAGTGGCTAGGCTTCAAGAAGGCCTCTTTTACAGGGAGATATGCAATCAGGGGTTGTGCAGAGGTCAACAGCAGTCATGGATTAGAGCCCAGGTTTATGCAGTACTTTGGCAAAGGTTTTAGAGCTGGTGTTATGCCTTGTGATGAGAAGGCTGTTTACTGGTTTTTCACTTGGACACCCACCAGCCAAGAGAAAGAGCTGGAAGAGAACCCTGCCAAACTGAAACAATACGTGTTAAAGAAGCTTGAGAATATGCCAAGTGATGTTAGATACTACATAGAAAAAACAGAGCTGGATGCCATCCTATTAGCTCCATTGAGATTTAGGCATCCCTGGGAGCTGATGTTGGGGAATATTAGCAAAGGCAATGTTTGTGTTGGTGGAGATGCTTTCCACCCCATGACTCCTGACCTTGGTCAAGGAGGGTGTTGTGCCTTAGAAGATGGGGTTGTTTTAGCAAGGTGCCTAGCTGAGGCATTCTCCAAACAGAAGCATGCAGAAGAGGAGCAACACAAAAGGATTGAGAAAAGCTTGAAGAAATATGCAAAGGAGAGAAGATGGAGAAGCATTGATGTCATTGCTACAGCTTATGTGGTTGAAGTAATCATGGAATCAGCAGTTGAAGACATAGTGATTGTGGGAGCTGGAATTGCTGGCCTCACAACAGCCTTGGCACTTCACAGGTTGGGTGTGAAAAGTTTGGTGTTGGAATATTCAGATGGTTTGAGAGTGACTGGGTTTGCTTTGACAACATGGACAAATGCTTGGAAAGCTTTGGATGCTGTTGGCGTCGGAGACAATCTTCGTCTCCAACATCTCCGCCTACAAGAGAATGTGAGTACATCTTTGAGCATAGGGCAAGAAACATCAAGATTGCCCTTCAAGGGCACAAGAAAAAGTGGAGACTGTGAAGTTCGTTGTGTAAGGAGACAAATAATGTTGGAAGCACTTGCTAACGAGCTTCCAAGTGGCACCATTAGGTTCTCGTCAAAGGTTGTTGCAATTCAAGAATCTGGCTGTTTCAAGATACTCCATCTTGCTGATGGAACAACCATCAAAACCAAGGTGTTGATTGGGTGTGATGGAATAAACTCTGTGGTAGCAACGTGGCTTGGGTTCAAGGAGGCATCTTTTACTGGGAGATACGTTATCAGGGGTTACACAAAGTTGATGAACAATCATGGGCTTCAACCTGATTTCATGCACTTCTTTGGAAAGGGTTTTCGATCCGGTGTATTGCCTTGTGATGACAAAACTGTTTATTGGTTTTTAACTTGGACTCCAACCACTGAAGACAAAGAGCTAGTTAACAACCAAGCCAAAATGAAGCAATTGGTGTTGAAAAAGCTTGAGAAAATGCCAAGTAATCTCAAATGGTGCATTGAGAAAACGGAACCAAAAGATATCTTAACATCTCCACTGAGATATAGACACCACTGGGAGCTTGTGTTAGGAAATATTAGTAAAGGCAATGTTTGTGTTGTTGGAGATGCTTCTCACCCCATGGCCCCTGACCTAGGTCAAGGTGGGTGTTGTGCCTTGGAGGATGGGATTATTTTAGCCAGATACCTAGCTGAGGCATTCTCCACAAAGCCTAACAAACATGGTAAAGAGATTGGAAAAAAGGATGAGACTAAGGAGCAGTACAAGAAAATTGAGGCTAGCTTGAGGAAATATGCAAGAGAGAGAAGATGGAGAAACGTTGATATCAGTGTTACATCTTATGTTCTGGGGTTTGTTCTGCAGGGTGATTTGAAAATGGTTGCACATGTTAGGGACAAAATTTTGCCTGATTTCCTGGCTGAGTTGCTGTTGAAGAAGTCAGATTTTGATTATAAGACCGATGATATCAAAGCCGAGGACAATATGGAGGCTAGAAGCAGGAGCAAGATTATCACCAAGAGCCTTTCGCATATTCTTGTTCCTCATCGTCGTCTTCTTCGTCTGATTGATTTTTGTAAGGGTATATCAATCTGCGCTTTGCTGTTGATTTTGATTTCGGTTTTGGATACTGCTAATTTTAATGCTATGGGAGTTCAACGGCATGAAGCGCTTGCTGAAGACGAGCCGGCTGAAAATGCTTGTGCCAGTAGTTCTTTGAACCAAGGTTCTCTTCCCAGTGAGTTTGCCAGCAAGAATCCATGTGTAAATACTGAAAGTAGTGAAGTTAATGAATCGGGTGACATTTCTTATGAGAAAAGCAATACACCACATATCTATAGACAAGATGTTGTGAAAAATAATACTAGTGGCATGATTGGGATTGTGACAGAGGTAGCTGGTGATTCAGATTCGGATTCAGATAGTAGCATCACTGATGATGAGAATGATAGTGACGATGAGGATGGGGATGGTGAGGAAGGCGATGACAGTAATATTACTAGCAGGAATTCTGAAAGTAATGTTGCTGCTGGGCATTGTAAAACCGATGCTCTTCTGGCTGACCAGTTGCGTGTACTGTGGATGGACGAATCTGAATCCACTCAAAATTTCAGTGATGTCGAAGTTGTTGATCGTGGATTTTTACATGGTGATTTTGTTGCTTCGGCTTCAGATCCTACTGGGCAAGTGGGTGTGGTGGTTGATGTCAATATATGTGTGGATCTGTTGGCCCATGATGGATCTATAGTAAAAGACGTCTCGTCAAAAAACATAAATCGTATTAGGGATTTCACTGTTGGTGATTATGTGGTGCTTGGGCCGTGGTTAGGCCGAATTGATGATGTTTTGGACAATGTAACTGTCTTATTTGACGATGGTTCAGTTTGTAAAGTCTCCAAAGCAGATCCATTAAATCTTAAACCAATTTCTAAGAATATTCTTGAAGATGGGCATTTTCCTTATTACCCAGGGCAACGGGTAAGGGCTAGCTCCTCATCTGTTTTCAAGAATTCAAGATGGCTGTCTGGCTTGTGGAAAGCTAATAGGTTAGAGGGTACTGTAACGAAAGTTACAGTTGGATCAGTGTTTATTTATTGGATAGCATCTGCAGGTTATGGGCCATATTCTTCTACTGCCCCTGCTGAGGAGCAGAGTCCAAAAAGCTTAAAGTTGTTGTCTTGTTTTTCTCATGCAAATTGGCAATTGGGTGACTGGTGTCTCTTACCCTCATCAGGACTGTCATCCTCAGCTTCCATGGACAAAGGCATATCAAAATTGGAACTTAACGATGCTACTAACAATGCATTAGATTCTAATCACACAGGAAGTGGGTGTGATTCCGAAGAAGCTACTGTTGAGGAAACAAATGGGGTTAAGGATACTATGGACCTTGATCCAGCTGATTCTTTGGAAGGGAATGATGGAAATGAGAAAAGTAATCCGTCACGTGATTCTAGTTCATGCAGCAGTTCTATATCCGTATCAAAGGAACCTGTCCATGAAGCTTGGCCTCTTCACCGCAAGAAAATTAGGAAAGTTGTCATCAGGAAAGAAAAAAGGGCCCGAAAGAAAGAGGAAAGTTTTGAGAAAGCTCTTTTGATTGCCAACACAAGAACTAAAGTTGATGTTGCATGGCAGGATGGAACAATAGGACGTCAACTGAATTCTACAAGTTTGATTCCAATAGATAATCCTGGTGACCATGAATTTGTTTCAGAACAATATGTGGTGGAGAAGACCTCCGATGATGGTGAGGATATTTCCGAAGCTAGGCGAGTTGGGGTTGTGAGAAGTGTTAATGCAAAGGAGCGGACAGCTTCTGTGAGGTGGTTAAAAAAGGTTGCCAGAGCAGAAGATCCTCGAGAGTTTGACAATGAGGAAGTTGTTAGTGTGTATGAGCTAGAGGGCCATCCAGATTATGATTACTGCTATGGGGATGTGGTTGTTCGCCTGTCGCCTGTGTCTGTACATTTAGAAACAGCTTCTGTTGGAGAGTCCACTGAGAAATCGGAGCAAAAAACTGAGCATGCGATTAAAAAGGAAGCAAAAACCAAAACTGAAGCTAATAAAGTACAAAATGCATCTGCTGATACTTCTGTCCAATTTACTGACCTCTCTTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACTTGGGCTGATGGGATGGTGTCAACGGTTGGACCCCAAGCGATTTATGTGGTTGGTCGAGACGATGATGAAGAATCAATTGCTGCTGGGAGTGAAATAAGTGATGCTGCTAGCTGGGAAACTGTTAATGATAATGAAATGGAAGTTCTTGAGGATTCCAGAGAGGATATTGAGAGGGAAAACTCAAGCAGTCTTCCTTCCGAGGAAGAAGAAAGTGGAGAGAATGATTTTGGTAGGGCTGCTGCACTTTCTGTTCCTTTAGCAGCATTTCGGTTTGTCACTAGACTTGCCACTGGAATATTCTCAAGGGGCCCAAGGAACATGGATCCTGTTCACATTCAGATAAAAGCTGGACATGAACATCCATCACCAGTACTGAATGATGATTCTAGTTCTCAGAAACTTATTGCCATTGATGGTGATAATTCAGGCAATAAGAATGAAAGATATGAGGAGGTTGTTTCAGAAGCAACTGAAACTCTGGAAGCATGTGAGACACTTTGCAGCATGAAAAATCAAGATGTTCTTGCAACTTGCGATAATGGGAATTGCAGTTTGAAACATTTTGACATAACACAAGATCCATCAGACCACTACTTTATTGGTGCAAATGGACAGAGTAACAACCGGAAATGGTTAAAGAAAGTGCAACAAGATTGGAACATACTGCAGAATAACCTTCCTGAGGAAATCTATGTACGAGTTTATGAAGATAGAATGGATCTCTTAAGAGCAGTTATTGTAGGGCCATATGGAACCCCTTACCAAGATGGACTCTTTTTCTTTGATTTTCACCTTCCGCCAGAATACCCTGATGTTCCACCGTCTGCATACTATCATTCTGGTGGCTGGCGGATTAACCCTAATTTGTACGAGGAAGGGAAGGTTTGCCTTAGCCTTCTAAATACATGGACAGGCAGAGGAAATGAAGTATGGGATCCAAAATCCTCTAGCATTCTTCAAGTCCTAGTTTCACTGCAAGGTTTAGTACTCAACTCTAAGCCTTACTTCAATGAAGCTGGGTATGATAAGCAGATTGGAACAGCTGAAGGAGAGAAAAATTCATTGTCATACAATGAGAATACATTTTTACTTAACTGCAAGACTATGATGTATGTCATGAGAAAACCCCCCAAGGATTTTGAAGTGCTCGTCGAAGAACATTTTAGGAGGCGGGGCCATAACATCCTTAAGGCTTGTGATGCATATATGAAGGGTTGCTTGATTGGCTCGCTGACTAGAGATGCCTCCATAAGTGAAAAGAGCAGTCAGAATTCAACCTCTGTGGGTTTCAAGTTGATGTTAGCCAAGATAGTGCCAAAGCTTTTCTTGTCACTAAGTGGGGTTGGAGCTGATTGCGAGGAATTTAAGCATCTGAAAGATTTGTAG 5934 0.4247 METNLAENIVIVGAGIAGLTTALGLHRLGIRSLVLESSDSLRVTGFALSIWNNAWKALDAVGVGDILRHQHLQLNGIVTTSLITGQQTSAMPFRATGNQQDVEIRCVKRKSMLEALVNEIPRDTIRYLSKVVAIEEFGFYKIVHLDDGTIIKTKVLIGCDGVNSLVAKWLGFKKASFTGRYAIRGCAEVNSSHGLEPRFMQYFGKGFRAGVMPCDEKAVYWFFTWTPTSQEKELEENPAKLKQYVLKKLENMPSDVRYYIEKTELDAILLAPLRFRHPWELMLGNISKGNVCVGGDAFHPMTPDLGQGGCCALEDGVVLARCLAEAFSKQKHAEEEQHKRIEKSLKKYAKERRWRSIDVIATAYVVEVIMESAVEDIVIVGAGIAGLTTALALHRLGVKSLVLEYSDGLRVTGFALTTWTNAWKALDAVGVGDNLRLQHLRLQENVSTSLSIGQETSRLPFKGTRKSGDCEVRCVRRQIMLEALANELPSGTIRFSSKVVAIQESGCFKILHLADGTTIKTKVLIGCDGINSVVATWLGFKEASFTGRYVIRGYTKLMNNHGLQPDFMHFFGKGFRSGVLPCDDKTVYWFLTWTPTTEDKELVNNQAKMKQLVLKKLEKMPSNLKWCIEKTEPKDILTSPLRYRHHWELVLGNISKGNVCVVGDASHPMAPDLGQGGCCALEDGIILARYLAEAFSTKPNKHGKEIGKKDETKEQYKKIEASLRKYARERRWRNVDISVTSYVLGFVLQGDLKMVAHVRDKILPDFLAELLLKKSDFDYKTDDIKAEDNMEARSRSKIITKSLSHILVPHRRLLRLIDFCKGISICALLLILISVLDTANFNAMGVQRHEALAEDEPAENACASSSLNQGSLPSEFASKNPCVNTESSEVNESGDISYEKSNTPHIYRQDVVKNNTSGMIGIVTEVAGDSDSDSDSSITDDENDSDDEDGDGEEGDDSNITSRNSESNVAAGHCKTDALLADQLRVLWMDESESTQNFSDVEVVDRGFLHGDFVASASDPTGQVGVVVDVNICVDLLAHDGSIVKDVSSKNINRIRDFTVGDYVVLGPWLGRIDDVLDNVTVLFDDGSVCKVSKADPLNLKPISKNILEDGHFPYYPGQRVRASSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFIYWIASAGYGPYSSTAPAEEQSPKSLKLLSCFSHANWQLGDWCLLPSSGLSSSASMDKGISKLELNDATNNALDSNHTGSGCDSEEATVEETNGVKDTMDLDPADSLEGNDGNEKSNPSRDSSSCSSSISVSKEPVHEAWPLHRKKIRKVVIRKEKRARKKEESFEKALLIANTRTKVDVAWQDGTIGRQLNSTSLIPIDNPGDHEFVSEQYVVEKTSDDGEDISEARRVGVVRSVNAKERTASVRWLKKVARAEDPREFDNEEVVSVYELEGHPDYDYCYGDVVVRLSPVSVHLETASVGESTEKSEQKTEHAIKKEAKTKTEANKVQNASADTSVQFTDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVGRDDDEESIAAGSEISDAASWETVNDNEMEVLEDSREDIERENSSSLPSEEEESGENDFGRAAALSVPLAAFRFVTRLATGIFSRGPRNMDPVHIQIKAGHEHPSPVLNDDSSSQKLIAIDGDNSGNKNERYEEVVSEATETLEACETLCSMKNQDVLATCDNGNCSLKHFDITQDPSDHYFIGANGQSNNRKWLKKVQQDWNILQNNLPEEIYVRVYEDRMDLLRAVIVGPYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTMMYVMRKPPKDFEVLVEEHFRRRGHNILKACDAYMKGCLIGSLTRDASISEKSSQNSTSVGFKLMLAKIVPKLFLSLSGVGADCEEFKHLKDL 1977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01547 1977 MobiDBLite consensus disorder prediction 934 955 - -
Spst10g01547 1977 FunFam Probable ubiquitin-conjugating enzyme E2 23 1692 1965 - -
Spst10g01547 1977 SUPERFAMILY FAD/NAD(P)-binding domain 376 766 IPR036188 -
Spst10g01547 1977 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1726 1886 IPR000608 -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 874 902 - -
Spst10g01547 1977 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 376 398 - -
Spst10g01547 1977 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 520 535 - -
Spst10g01547 1977 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 656 671 - -
Spst10g01547 1977 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 671 687 - -
Spst10g01547 1977 Coils Coil 709 729 - -
Spst10g01547 1977 Coils Coil 1662 1682 - -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 1267 1290 - -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 1228 1244 - -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 1567 1591 - -
Spst10g01547 1977 Coils Coil 331 351 - -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 1455 1484 - -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 1228 1294 - -
Spst10g01547 1977 CDD UBCc 1729 1879 IPR000608 -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 1246 1260 - -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 925 969 - -
Spst10g01547 1977 SMART ubc_7 1729 1886 - -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 1458 1481 - -
Spst10g01547 1977 Pfam FAD binding domain 9 330 IPR002938 GO:0071949
Spst10g01547 1977 Pfam FAD binding domain 376 695 IPR002938 GO:0071949
Spst10g01547 1977 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 7 372 IPR044560 -
Spst10g01547 1977 Pfam Ubiquitin-conjugating enzyme 1731 1875 IPR000608 -
Spst10g01547 1977 SUPERFAMILY FAD/NAD(P)-binding domain 8 367 IPR036188 -
Spst10g01547 1977 Gene3D - 375 760 IPR036188 -
Spst10g01547 1977 Gene3D - 8 374 IPR036188 -
Spst10g01547 1977 SUPERFAMILY UBC-like 1707 1893 IPR016135 -
Spst10g01547 1977 Gene3D Ubiquitin Conjugating Enzyme 1660 1957 IPR016135 -
Spst10g01547 1977 MobiDBLite consensus disorder prediction 1565 1592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01547 Spst-Chr10 16085115 16108233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01547 1322 1968 Miscellaneous Gene Families AT2G33770 40.451 8.97e-134 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01547 K10581 - gmx:100809513 1864.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01547 10 16085115 16108233 Spst10g01547 10 16085115 16108233 ECH