Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01542 ATGGCCAAGCCAGTGTCCATTGAGGTATGGAACCCAAGTGGAAAATACAGGGTTGTGAGCACAAAACCAATGCCTGGGACTCGTTGGATTAATCTTCTCATTCAGAATGATTGTCGCCTTGAAATATGTACCGAGAAGAAAACGATACTGTCAGTTGAAGACATCATTGCTTTGATTGGTGATAAGTGCGATGGAGTTATAGGACAGTTGACTGAAGACTGGGGAGAAGAATTGTTCTCTGCTTTGAGCAAAGCTGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAATGTGAATGTTGACGCTGCAAACAAGTATGGTGTTGCTGTTGGAAACACTCCTGGTGTGCTCACTGAGACAACAGCAGAGTTAGCAGCTTCACTGTCTTTGGCAGCTGCTAGAAGGATAGTTGAGGCTGATGAGTTCATGAGGGGAGGATTATATGATGGATGGCTACCTCATTTATTTGTTGGAAACTTGCTCAAGGGACAAACTGTTGGTGTAATTGGAGCTGGTCGTATTGGATCCGCTTATGCAAGAATGATGGTGGAAGGGTTCAAGATGAACCTAATCTACTTTGACCTCTACCAAGCCACACGACTAGAAAAGTTTGTTACAGCTTATGCTGCATTCTTGAAAGCAAGTGGTGAGACCCCAGTGGCATGGAAAAGGGCATCAACCATGGATGAGGTCCTCCAGGAGGCAGATGTAATTAGTCTTCATCCTGTGTTGGATAAAACCACCTATCATCTAGTCAACAAGGAAAGACTTGCTAAGATGAAGAAGGAAGCAATTCTTATAAATTGCAGTAGAGGGCCTGTTATTGATGAAGCTGCACTAGTGGAGCATTTGAAACAGAATCCAATGTTTCGAGTAGGCCTTGATGTGTTTGAGGAAGAGCCCTACATGAAACCCGGGCTTGCAGAGTTGAAGAATGCCATTGTGGTACCTCACATTGCATCAGCGTCCAAGTGGACCCGTGAGGGAATGGCAACACTTGCAGCTCTAAACGTGCTGGGTAAGATTAAAGGGTACCCAGTTTGGTTTGATGCCAACAGGGTGGAACCATTCCTCAATGAGAATGCTAGACCACCATCTGCATGCCCAAGCATTGTCAATGCAAAAGCTCTGGGTTTGCCAAGTTCAAAGCTATAA 1161 0.4479 MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQNDCRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVNVDAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRGGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQATRLEKFVTAYAAFLKASGETPVAWKRASTMDEVLQEADVISLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEAALVEHLKQNPMFRVGLDVFEEEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLNENARPPSACPSIVNAKALGLPSSKL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01542 386 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 168 196 IPR029752 -
Spst10g01542 386 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 322 IPR006140 GO:0051287
Spst10g01542 386 Gene3D - 118 321 - -
Spst10g01542 386 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 33 347 IPR006139 GO:0016616|GO:0051287
Spst10g01542 386 FunFam Glycerate dehydrogenase HPR, peroxisomal 118 321 - -
Spst10g01542 386 Gene3D - 18 346 - -
Spst10g01542 386 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 17 156 - -
Spst10g01542 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 323 IPR036291 -
Spst10g01542 386 CDD GDH 16 346 - -
Spst10g01542 386 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 18 349 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01542 K15893 - gmx:547640 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01542 10 16042805 16045808 Spst10g01542 10 16042805 16045808 ECH