Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01518 ATGATAGTTTGGTTTACTGTGAATTTGAGTATGAAAGAGAGTGGGGAGGACTTGTGTGATGCTTCCCCTTTACGAGAGAATGCGAGAGAGAAAAATGAGGGGGGAGTCTTCTGTCTTCAGTTTTTAGGTGCTAATATGGAGAAACTTATCAGTGTGCGTTTGAAAAACGTGAGAGAAATGGAGTTCTCGTTGAGTATATTGCTGCTGGTTGAAATCGATGCCATGAACTCTCGGATTGATTTGATGTGGCACAGAATGTATGACAGCTGTAGGAAGATTGGCAATCTTTGGTTGAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCTCCTGAGGGCCGTTTGTTTCAGGTTGAATATGCAATTGAAGCCATCAAGCTGGGATCAACTGCAATTGGGTTGAAGACTAAAGAGGGTGTTGTCCTTGCAGTTGAAAAACGCATAACTTCACCACTGCTGGAGCCAAGTAGTGTTGAGAAAATTATGGAAATTGATGAGCACATAGGTTGTGCAATGAGTGGATTGATTGCTGATGCCCGAACACTTGTTGAGCATGCACGGGTGGAAACTCAGAATCATAGGTTCTCCTATGGTGAGCCAATGACTGTCGAGTCCACAACCCAAGCTCTTTGTGATCTCGCCTTGCGATTTGGTGAAGGTGATGAAGAATCCATGTCTCGACCATTTGGAGTATCTCTTCTCATTGCTGGCCATGATGAGAATGGGCCGAGCTTGTATTACACTGATCCATCTGGCACATTTTGGCAATGCAATGGAAAAGCTATTGGTTCAGGGTCGGAAGGTGCAGACAGTTCTCTGCAAGAACAATACAACAAGGACCTAACTCTTCTGGAAGCGGAGACTATTGCTTTATCCATTTTGAAGCAAGTTATGGAAGAGAAGGTTACTCCCAACAACGTTGACATTGCCAAGGTGGCCCCAACATATCATCTTTATACCCCCTCTGAGGTGGAAGCTGTGATAAGTCGTCTATGA 996 0.4448 MIVWFTVNLSMKESGEDLCDASPLRENAREKNEGGVFCLQFLGANMEKLISVRLKNVREMEFSLSILLLVEIDAMNSRIDLMWHRMYDSCRKIGNLWLRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQYNKDLTLLEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPSEVEAVISRL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01518 331 CDD proteasome_alpha_type_5 102 312 IPR033812 GO:0019773|GO:0043161
Spst10g01518 331 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 101 328 IPR029055 -
Spst10g01518 331 ProSitePatterns Proteasome alpha-type subunits signature. 102 124 IPR000426 GO:0006511|GO:0019773
Spst10g01518 331 Pfam Proteasome subunit A N-terminal signature 102 124 IPR000426 GO:0006511|GO:0019773
Spst10g01518 331 Pfam Proteasome subunit 125 312 IPR001353 GO:0005839|GO:0051603
Spst10g01518 331 ProSiteProfiles Proteasome alpha-type subunit profile. 117 328 IPR023332 -
Spst10g01518 331 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 106 328 - -
Spst10g01518 331 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 96 331 IPR029055 -
Spst10g01518 331 FunFam Proteasome subunit alpha type 96 331 - -
Spst10g01518 331 SMART Proteasome_A_N_2 102 124 IPR000426 GO:0006511|GO:0019773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01518 Spst-Chr10 15835548 15840072 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01518 K02729 - gmx:100796147 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01518 10 15835548 15840072 Spst10g01518 10 15835548 15840072 ECH