Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01280 ATGACCATCGACATCCCAACCTTGGAAGACAGGTATATTGATTCTTGCAGGAGACAGGGTGTTTTGCCTAATTCTTCTATTTTGTCAAGCCTTGTAAAGGCTGAGGTAAAAAAGGCCATGCATGAGCTGTGCAGCCTGGAGATCTTAATTGATGACCTAAAGGATGTTGATATTGCTCCACTTCTTGACTTGTGCATGAACTTTGATGCTTCTGAAATTGAAGCTGTCGATGTACGTAATGAATCATCATGTGTATTAAATGGAGAATATGCATTACCATTGATGCGTGCTGTTAATCAAAAGCTTCGAGTAGTCCATCTACATGATCTGTCATATGGAAAAGACTTCTTACGGGATATTTCACAAAGAGGTTTGGCATGCCAAGTTTTGACATTGAGGTGCTCACGTTTCCGGAAGCTGAACTTAATGGGGGAGTTCATGCATATGCATACCCTAAATCTTGATTTCAGTTCTTGCCTGACCAGTTTCCAGGAGGACTGTTTTAATTGTATGCCCAATCTAATGCGCCTCTCAATGTGTGATACAAGGATTACAAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTAATTGAATTAAGGTTTCAATATTGGCAGTATTGCAATGATGCTGGGACATCTTTTATCTCAACCAGCGGGAAGTCTGATGACACTGCTGATTTTAGCCTTCTTGATAGTATTCCTTTATTTGGTCCCTTCACCAATACAACAGAACTGACAGATCCCAACTTTAGTGCTGAAGATCCACTGAGAAACTTTTATACTTTGGATGAAGAAGTTATAAATCATGATGCTCAAAGCATGGCCGAGGATTCATCAGATGATAGTGAAGATGACTATACTAGTGATCATCATAGATACTGGTTATCAGATGTTTTTCCTGGGTGGAGTTCTGAAGTGCCTCTTCTTCATGAGAATGTAGATGGAGAAGAATCATCACAAGGTGCTTTTACAGAGCCTATTGCTGATGTTTCTATGAAGTATATGTCTCGTCATGCATCACCAATATGCTATGAGAAGCATTACAGAGAGTTCATGATTGCTTCATTACCAAATCTGAAAAATTTAGATAATATGCCAATCAGAAAGATTGACAAGGAAAGGTCTACTGGAATATTTTCTCAATATTTTGAATATCTTCCGTATAAATGGAAGCACAAAGAGAGTGTTGTAAGTATCTTGCAGAAGAGAGAAATAAAATCAGGCCACAGTAAGGTGCAATCTTCCAAGCACGGGCCATCTTATCCATCTGGGCAATCCCAATATTTTTATACTAGGTCTCTTTCTGCTGCTAAATTGGGGTCCTCAACTTGGCCTTTCTTACATCCCCTTTCTCTAATAGGATGTGAATTGGACAAGGGCTTTCATCCAAGGCAGTTTGAGTACCATCCATCTGACTCCAGTTTGATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTCATCAACCATGAGAATGAACATATTGTGAGTTATATCCCATCGCTTGGAGCAATGAATAATGTTTTGGGTCTCTGTTGGCTCAAAAAATATCCCTCCAAGCTTATAGCAGGATCAGACAATGGTTCCTTGAAATTGTATGACATCCACCATATACCAAGAAAAGTTACTGGCATACATGGGAATTTTGGTTGTGTTACCTTTGATGAATTTGACCAGTTGACATCTGTTCATGTTAACTCTACGGATGAGCTATTTCTTGCAAGTGGTTACTCGAGGAATGTTGCTTTGTATGATATCAACAGTGGGAAACGCTTACAAGTATTCACAGATATGCATCGTGGGCATATTAATGTAGTCAAGTTTGCTAATCATTCCCCATCAATTTTCGCCACTTCATCATTTGATCACGATGTGAAAATGTGGGACTTGAGACAAAAACCAATACACCCCTGCTTCACAGTTTCAAGCTCCAGAGGAAATGTGATGGTTTGCTTTTCTCCAGATGATCAATATATTCTTGCTTCGGCGGTTGATAATGAGGTTAGACAATATCTGGCCGTTGATGGTAGGCTTCACTTAGTTTTTGATATAGCTCCCACTGAAAGCTCTCAAAATTACACCCGTTCTTATTACATTAATGGGAGGGACTACATCATAAGTGGGAGTTGTGATGAACACGTCCGTATTTGCTGTGCTCAAACAGGGAGACGCCTAAGAGATATATCCCTTGAGGGAAGAAACTTAGGAAGCTCCGTGTTTGTTCAGTCTTTGAGGGGTGATCCTTTCCGAGATTTCAATATGAGCGTGTTAGCAGCATACATGCGGCCAGGCTCCAAGTCTAAAATTGTCAAGATCAACTTACTAGCATCTAGTGGACATTGCAACAAGGATGATATTGATGAATTGCGCCCTTGCCCGTTTCACAGTATGGGAGCCTGA 2412 0.4022 MTIDIPTLEDRYIDSCRRQGVLPNSSILSSLVKAEVKKAMHELCSLEILIDDLKDVDIAPLLDLCMNFDASEIEAVDVRNESSCVLNGEYALPLMRAVNQKLRVVHLHDLSYGKDFLRDISQRGLACQVLTLRCSRFRKLNLMGEFMHMHTLNLDFSSCLTSFQEDCFNCMPNLMRLSMCDTRITNLWTTVAALSKLPSLIELRFQYWQYCNDAGTSFISTSGKSDDTADFSLLDSIPLFGPFTNTTELTDPNFSAEDPLRNFYTLDEEVINHDAQSMAEDSSDDSEDDYTSDHHRYWLSDVFPGWSSEVPLLHENVDGEESSQGAFTEPIADVSMKYMSRHASPICYEKHYREFMIASLPNLKNLDNMPIRKIDKERSTGIFSQYFEYLPYKWKHKESVVSILQKREIKSGHSKVQSSKHGPSYPSGQSQYFYTRSLSAAKLGSSTWPFLHPLSLIGCELDKGFHPRQFEYHPSDSSLMVFGTLDGEVVVINHENEHIVSYIPSLGAMNNVLGLCWLKKYPSKLIAGSDNGSLKLYDIHHIPRKVTGIHGNFGCVTFDEFDQLTSVHVNSTDELFLASGYSRNVALYDINSGKRLQVFTDMHRGHINVVKFANHSPSIFATSSFDHDVKMWDLRQKPIHPCFTVSSSRGNVMVCFSPDDQYILASAVDNEVRQYLAVDGRLHLVFDIAPTESSQNYTRSYYINGRDYIISGSCDEHVRICCAQTGRRLRDISLEGRNLGSSVFVQSLRGDPFRDFNMSVLAAYMRPGSKSKIVKINLLASSGHCNKDDIDELRPCPFHSMGA 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01280 803 SMART LRRcap_2 349 367 IPR003603 -
Spst10g01280 803 SMART WD40_4 496 538 IPR001680 GO:0005515
Spst10g01280 803 SMART WD40_4 554 589 IPR001680 GO:0005515
Spst10g01280 803 SMART WD40_4 592 633 IPR001680 GO:0005515
Spst10g01280 803 SMART WD40_4 638 676 IPR001680 GO:0005515
Spst10g01280 803 SUPERFAMILY RNI-like 89 217 - -
Spst10g01280 803 PANTHER BNAC09G30780D PROTEIN 2 802 IPR046377 GO:0071493|GO:0080008
Spst10g01280 803 Pfam WD domain, G-beta repeat 604 633 IPR001680 GO:0005515
Spst10g01280 803 Gene3D Ribonuclease Inhibitor 101 381 IPR032675 -
Spst10g01280 803 SUPERFAMILY WD40 repeat-like 466 732 IPR036322 GO:0005515
Spst10g01280 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 600 635 IPR001680 GO:0005515
Spst10g01280 803 Gene3D - 466 751 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01280 519 719 Miscellaneous Gene Families AT5G08390 23.267 3.78e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01280 - - gmx:100806443 1488.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01280 10 13489404 13496581 Spst10g01280 10 13489404 13496581 ECH