Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01277 ATGGCACAAAAACTCTCTTTCCCTCTTAGCCTCCCAAACCCACCCTCCCCCTCACCCTCACCCTCAAACCCTACATTCCCAAATCCCCCTTCTACCTCACCCATAACTATAACCCCTCTTCTTCAAGATCTCTTTTTTAACCAAAAGCCCTCTTCTCCACATCTTCTACGCCCCACCCCCTCCACCCACCCTACACCCCGCCTCTCCCCTCAAGCTTACCGGATTCTCCAAACCCTAATCAACCCTTCCTTCGATTCCAATAGCTTCCACCAAATATTCCCTATACTATTCCATCAACTCGCTTCCTCCTCTCTCTCCTCGGACGTTCTCGGCATAATCAAGGGATTAGGGTTTAACAAGAAGTTCGATCTCGCATTGTCCGTCTTCGACTTTATTCGAACCCGAAACGACCTCGTTCCGCTCTTGAACGGTTCCGTAATTTCCGTGATTGTCAACCTTCTCGGTAAAACGGGTAGGGTTTCCCATGCGGCGTCGTTGCTGCACGACCTAGAAACCGACGGCGTCGAGGTTGATGTTTATGGCTACACCTCTCTCATAACTGCTTATGCTAATAATAAAAAATACAGAGATGCACTCAAGGTGTTTGGCAAAATGAAAGAAGTGGGGTGTGAACCCACCTTGATTACTTACAATGCAATTTTGAATGTTTATGGGAAGATGGGCGTGCCTTGGACTAAGATCATTGCACTTGTTCAGGACATGAAGTGCCATGGCCTTGCCCCTGATTTGTGTACTTATAATACCCTTATAAGTTGTTGTAGGGCAGGTTCCTTGTATCAAGAGGCGCTTGATCTTTTTGAGGAGATTAAGGTGGCTGGATTTACACCGGATGTGGTTACTTATAACGTGTTGTTGGATGTTTATGGCAAGTCCAGGCGGCCCAAAGAAGCCATGGAGGTTCTGAAACAGATGGAGATTAATGGTTTTCGGCCTAGCGTTGTTACTTACAACTCGTTGGTGTCAGCTTATGTTAGAGGTGGCTTGTTGGAGGATGTGTTGGAGCTGAAAAGGAAAATGGTGGTGAAGGGGATTAAGCCTGATGTTTACACCTATACTACACTTTTGTCAGGGTTTGTGAAAGCTGGGAAAGATGAGCTTGCCATGCAAGTTTTTGAGGAAATGAGAGAGGTGGGGTGCAAGCCTAATATATGCACATTTAATGCCCTTATAAAGATGTATGGTGACAGAGGAAAGTTTGAGGAAATGGAGAGAGTTTTCAAGGAGATTAAGGTCTGCAAGTGTTCCCCTGATATTGTTACTTGGAATACACTTTTGGCAGTGTTTGGACAAAATGGAATGGACTCTGAAGTGTCAGGGGTTTTTGAAGAAATGAAGAGAGCTGGGTTTGTGCCGGAGCGGGACACCTTCAACACACTGATAAGTGCGTATGGCAGGTGTGGTTCATTTGACCTAGCTATGACTGTTTATGAGAAAATGCTGGAGGCTGGAGTGAGTCCTGATCTTTCTACTTACAATGCTGTTTTGGCAACATTGGCTCGAGGAGGTCTTTGGGAGCAATCTGAGAAAATCCTTGCGGAAATGAAAGATGGTGGATGTAAACCTAATGAGGTAACGTATTCTTCTTTGCTTCATGCTTATGCCAATGGAAGAGAGGTTGATAGGATGAAGGCTCTAGCAGAGGAAATATACTCTGGCAAAATTGAAACGCATGCTGTTCTATTGAACACACTTGTTCTAGTACATAGCAAGGTTGATCTTGTAGTACAAACTGAACGTGCATTTTTGGAGTTTAGGAATAGAGGAATCTTGCCGGATATTACTACCTTGAATGCAATGCTTTCCATTTATGGGAGGAAGAAGAAGGGGTCCAAAGCCAATGAGATTTTAAACTACATGTATGAGAGTGGATTGACTCTAAGTTTGACTACATATAATTGTTTGATGCATATGTATAGCCGCACGGAAAATTTTCAAAAATCAGAGCAAATTTTGAGGGAAATTCTGGATAAAGGTATTGACCCAGATGTTATTTCATACAACATAGTTATTTATGCATATTGCAGAAATGGCATGATGGGGGAGGCAAAAAGGATATTTGACGAAATGAAAGCTCCTGCACCTGTTCCGGATGTTGTAACTTACAATACATTTATAGCATCTTACGCAGCTGACTCAATGTTTGTGGAGGCTATTGATGTAGTTCGGCATATGATCAAGCAAGGATGTAAGCCAAATCAGAATACTTACAACTCCATAGTTGATTGGTACTGTAAGCTCAAGCTACGAGATGAGGCATGCAATTTCGTTCAAGACCTTGACAACCTTGATCCACGTCTTGCTGAGAATGAAAAGAGCAGATTACTTGACCGCATAGCAAAGAAATGGTCACAACTTAAACCATGA 2385 0.4335 MAQKLSFPLSLPNPPSPSPSPSNPTFPNPPSTSPITITPLLQDLFFNQKPSSPHLLRPTPSTHPTPRLSPQAYRILQTLINPSFDSNSFHQIFPILFHQLASSSLSSDVLGIIKGLGFNKKFDLALSVFDFIRTRNDLVPLLNGSVISVIVNLLGKTGRVSHAASLLHDLETDGVEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGVPWTKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYQEALDLFEEIKVAGFTPDVVTYNVLLDVYGKSRRPKEAMEVLKQMEINGFRPSVVTYNSLVSAYVRGGLLEDVLELKRKMVVKGIKPDVYTYTTLLSGFVKAGKDELAMQVFEEMREVGCKPNICTFNALIKMYGDRGKFEEMERVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRAGFVPERDTFNTLISAYGRCGSFDLAMTVYEKMLEAGVSPDLSTYNAVLATLARGGLWEQSEKILAEMKDGGCKPNEVTYSSLLHAYANGREVDRMKALAEEIYSGKIETHAVLLNTLVLVHSKVDLVVQTERAFLEFRNRGILPDITTLNAMLSIYGRKKKGSKANEILNYMYESGLTLSLTTYNCLMHMYSRTENFQKSEQILREILDKGIDPDVISYNIVIYAYCRNGMMGEAKRIFDEMKAPAPVPDVVTYNTFIASYAADSMFVEAIDVVRHMIKQGCKPNQNTYNSIVDWYCKLKLRDEACNFVQDLDNLDPRLAENEKSRLLDRIAKKWSQLKP 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 634 668 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 248 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 497 530 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 321 355 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 286 319 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 391 425 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 462 494 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 356 390 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 671 697 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 426 458 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 637 670 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 182 213 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 251 285 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 706 739 IPR002885 -
Spst10g01277 794 NCBIfam pentatricopeptide repeat 215 249 IPR002885 -
Spst10g01277 794 Gene3D Tetratricopeptide repeat domain 229 331 IPR011990 GO:0005515
Spst10g01277 794 Gene3D Tetratricopeptide repeat domain 454 561 IPR011990 GO:0005515
Spst10g01277 794 Gene3D Tetratricopeptide repeat domain 68 228 IPR011990 GO:0005515
Spst10g01277 794 Pfam PPR repeat 664 697 IPR002885 -
Spst10g01277 794 MobiDBLite consensus disorder prediction 1 33 - -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 633 IPR002885 -
Spst10g01277 794 Gene3D Tetratricopeptide repeat domain 334 449 IPR011990 GO:0005515
Spst10g01277 794 Pfam PPR repeat family 493 542 IPR002885 -
Spst10g01277 794 Pfam PPR repeat family 703 752 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Spst10g01277 794 Pfam PPR repeat 426 456 IPR002885 -
Spst10g01277 794 Pfam PPR repeat 462 491 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Spst10g01277 794 Gene3D Tetratricopeptide repeat domain 562 699 IPR011990 GO:0005515
Spst10g01277 794 PANTHER OS03G0856100 PROTEIN 106 443 - -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Spst10g01277 794 Pfam Pentatricopeptide repeat domain 342 403 IPR002885 -
Spst10g01277 794 Pfam Pentatricopeptide repeat domain 590 645 IPR002885 -
Spst10g01277 794 Pfam Pentatricopeptide repeat domain 272 331 IPR002885 -
Spst10g01277 794 Pfam Pentatricopeptide repeat domain 165 227 IPR002885 -
Spst10g01277 794 Gene3D Tetratricopeptide repeat domain 700 771 IPR011990 GO:0005515
Spst10g01277 794 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Spst10g01277 794 MobiDBLite consensus disorder prediction 10 33 - -
Spst10g01277 794 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 229 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01277 Spst-Chr10 13465066 13467450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01277 580 770 Glycosyltransferase AT1G05670 24.479 4.90e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01277 - - gmx:100813079 1316.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01277 10 13465066 13467450 Spst10g01277 10 13465066 13467450 ECH