Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01258 ATGTCCTCTTCTCTCTCCTTATCACTCTCTGCCCCCTCCTCCATCAACGATTATTCCTTCCTCCATGGAACAAAGCTCTTTCCCCTTTCTCGAAGGGTGGCACCACGCCGCTTCAACTCTTCCTCTGCCAAGTGCTCCCTCGACCACATTCCCAAGCAGTTCAGAAAGGAAAATCTCAAGGATGGATTGACGGAAAACTACAAGAATGTACCTCAATATCTATATGGCCTTACTCCTTCACAAATGGACATGTTCATGACAGAAGATAACCCTGTCCGCCGGCAATCTGAGATGGTTACAGAGGAAAGCATCTCATCTGCCAGAAATTATATAGAGAATGGTGGAATGTGGAGTCTATCTGGCATGGGTAAAAATAATGCTTCAAAATACAGCATGAGTGTTAGTATGTATCGAGGAGGTAGGGGAACTGGAAGGCCAAAAACTGCTCCACCAGATCTGCCTTCTTTGCTTTTGGATGCTCGAATATGCTATGTGGGCATGCCGATTGTTCCAGCTGTGACCGAACTTGTTGTTGCTCAATTCATGTGGTTGGATTATGATAACCCTACCAAACCTATTTACTTATATATTAATTCATCTGGAACTCAGAATGAGAAGAATGAGACCGTGGGATCAGAGACTGAGGCATATGCCATATCTGATATGATGTCTTATGTCAAAGCAGATGTGTATACTGTAAATTGCGGCATGGCATTTGGTCAAGCAGCAATGCTTCTCTCACTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAACTCATCTACAAAATTATATCTCCCAAAAGTCAACAGATCAAATGGTGCTGTTATAGACATGTGGATTAAGGCAAAAGAGCTAGAGGCAAATTCTGAGTCTTACATTGACTTGTTAGCAAAAGGCACAGGGAAATCAAAGGAAGAAATTACTAAAGATGTCCAGAGGCCTAAGTATCTTCAAGCACAGGAAGCTATAGACTACGGAATTGCTGACAAAATAATCGATTCAAGTTCATCAGATGTTGCATTTGAGAAGCGGAATTATGATGAAATGCTTGCTCAATCAAGAGCTATGAGGAATCGGGCTGGTGGCAATCCTCAAGTGTCTCCTTCAGGATTCAGGTAA 1122 0.4278 MSSSLSLSLSAPSSINDYSFLHGTKLFPLSRRVAPRRFNSSSAKCSLDHIPKQFRKENLKDGLTENYKNVPQYLYGLTPSQMDMFMTEDNPVRRQSEMVTEESISSARNYIENGGMWSLSGMGKNNASKYSMSVSMYRGGRGTGRPKTAPPDLPSLLLDARICYVGMPIVPAVTELVVAQFMWLDYDNPTKPIYLYINSSGTQNEKNETVGSETEAYAISDMMSYVKADVYTVNCGMAFGQAAMLLSLGTKGYRAVQPNSSTKLYLPKVNRSNGAVIDMWIKAKELEANSESYIDLLAKGTGKSKEEITKDVQRPKYLQAQEAIDYGIADKIIDSSSSDVAFEKRNYDEMLAQSRAMRNRAGGNPQVSPSGFR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01258 373 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 40 337 IPR023562 -
Spst10g01258 373 MobiDBLite consensus disorder prediction 359 373 - -
Spst10g01258 373 SUPERFAMILY ClpP/crotonase 147 336 IPR029045 -
Spst10g01258 373 Gene3D - 127 340 - -
Spst10g01258 373 CDD S14_ClpP_2 152 332 IPR001907 GO:0004176|GO:0004252|GO:0006508
Spst10g01258 373 Pfam Clp protease 154 335 IPR023562 -
Spst10g01258 373 PRINTS Clp protease catalytic subunit P signature 192 212 IPR001907 GO:0004176|GO:0004252|GO:0006508
Spst10g01258 373 PRINTS Clp protease catalytic subunit P signature 152 167 IPR001907 GO:0004176|GO:0004252|GO:0006508
Spst10g01258 373 PRINTS Clp protease catalytic subunit P signature 232 249 IPR001907 GO:0004176|GO:0004252|GO:0006508
Spst10g01258 373 PRINTS Clp protease catalytic subunit P signature 311 330 IPR001907 GO:0004176|GO:0004252|GO:0006508
Spst10g01258 373 MobiDBLite consensus disorder prediction 354 373 - -
Spst10g01258 373 FunFam ATP-dependent Clp protease proteolytic subunit 127 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01258 Spst-Chr10 13355110 13358800 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01258 K01358 - gmx:100806258 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01258 10 13355110 13358800 Spst10g01258 10 13355110 13358800 ECH