Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01232 ATGTTGCAAACCCTAGGGGGCGTAATCCCTCGCTTCGTGAATCGGTCATGGCTCCGAAAACTGACGCTGCGTGCTATGGCATTCTCTTCCTCGTCCGATTATGGAGACCAGTCGCGTGGTGGGCTTCCCCGTTTCTACTCCGAAACTCTTCCTCCTTCCAAGGGTAGTGTTATACGGGTGCAAGGTGATGAATTTTGGCATATGACAAAAGTATTGAGGTTGACCACCAACGACAGGGTACAGCTCTTCAATGGAAAAGGAGGTCTGGTAGAAGGATGCATACAAGTCATTGATCGCAGTGGACTGGATTTTGTTGCATCGAGTGATTTGATATCAATACCTCCACAAAATACACAATTGCACGTATTTGCTGGTTTTGGTTCTCTAAAGGGTGGCCGTTCTGACTGGCTTGTAGAGAAGTGCACAGAACTTGGAGCCAATAGTGTAACTCCTCTATTGACTGAACGTTCTCCATCAATCTCAGAAAATCGGGTGGACAGATTGGAACGTGTCATTTTAGCAGCATCCAAACAATGTCAACGACTGCATGAAATGGTTCTGAAAGATCCTATAGAGATTGGTGACCTTTTGCACCTCATTGCACAATCAAAGCTATCACTTGTTGCGACAGCGAAGGCTATTCCTGTTCTTAGTGCATTGACGTCATTGGAAAAGGAAACCAGTGGCTTAATCATTGTTGGACCAGAAGGCGATTTCACTGAGAAAGAGGTGAGTATGATGATGGAAGCAGGTGCTACAGCTGTTAGTCTTGGACCTCATCGTCTTCGGGTTGAAACTGCCACGATATCACTTTTGGCAACTGTCATGTTATGGAGAGATGAAAAATATCCAATGAGTTCAATAGGGCAAAGCATACTGATGGCACTAACTGCTACACTAAACAAGTATGCTTCATCTAATTTGCAAGCAGTTCATAGAACACAAGGAAAAACGCCACACACAACCACACCAAGCACTAACTTGGAATTGGGAAGAAGAGGCGTTGTCTTATCCACTCTAATCGCCACAACCCAAATACCTGACTCTAGGACTCAGCTTCTTCAAAAATATCGGAAGAAATCCGAGGAAAACAAGGAGAAAAATGACAAAGAGAGGCTGGATAGTTATTACAAACGTAACTACAAGGATTACTTTGAATTGATGGAAGGGACATTGAAGGCAAGGGATGGGAAGGTTTCAGATACAGAAAAGGATATCCTTGATTGGCTTCAAAAAAACAAGTGA 1245 0.4386 MLQTLGGVIPRFVNRSWLRKLTLRAMAFSSSSDYGDQSRGGLPRFYSETLPPSKGSVIRVQGDEFWHMTKVLRLTTNDRVQLFNGKGGLVEGCIQVIDRSGLDFVASSDLISIPPQNTQLHVFAGFGSLKGGRSDWLVEKCTELGANSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMVLKDPIEIGDLLHLIAQSKLSLVATAKAIPVLSALTSLEKETSGLIIVGPEGDFTEKEVSMMMEAGATAVSLGPHRLRVETATISLLATVMLWRDEKYPMSSIGQSILMALTATLNKYASSNLQAVHRTQGKTPHTTTPSTNLELGRRGVVLSTLIATTQIPDSRTQLLQKYRKKSEENKEKNDKERLDSYYKRNYKDYFELMEGTLKARDGKVSDTEKDILDWLQKNK 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01232 414 SUPERFAMILY PUA domain-like 45 103 IPR015947 -
Spst10g01232 414 Pfam RNA methyltransferase domain 118 275 IPR046886 -
Spst10g01232 414 Pfam RNA methyltransferase PUA domain 61 104 IPR046887 -
Spst10g01232 414 Coils Coil 350 374 - -
Spst10g01232 414 NCBIfam RsmE family RNA methyltransferase 57 276 IPR006700 GO:0006364|GO:0008168
Spst10g01232 414 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 41 281 IPR006700 GO:0006364|GO:0008168
Spst10g01232 414 FunFam uncharacterized protein LOC106771328 isoform X2 41 285 - -
Spst10g01232 414 CDD RsmE-like 120 273 IPR046886 -
Spst10g01232 414 SUPERFAMILY alpha/beta knot 118 280 IPR029028 -
Spst10g01232 414 Gene3D - 41 299 IPR029026 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01232 K09761 - gmx:100777253 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01232 10 13110019 13117086 Spst10g01232 10 13110019 13117086 ECH