Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01051 ATGGTTAGGCTCAGGCTATGGCGGTCTTCTCTCTTAATTGCATTTACACTCTTATTCCATCAAGTCGGATTTTGTACTTCTTGGAGTGTGCAAACCCCAACTCCCCCTTTGCCAGTTCTCCCTCTCCCAACATACTCTCAGTTGAAATGGCAACAAAGGGAGATCATAATGTTCCTCCACTTTGGTGTCAACACATTCACTGACAGAGAATGGGGCACTGGCCAGGAAAACCCGGCAATCTTCAATCCCACAGCGCTCAATACCACCCAGTGGGCCACTGTGGTAGCAGATGCAGGGATTTCATTGATGATACTAACTGCTAAACACCATGATGGCTTCTGCCTCTGGCCTTCCAAGTACACTGACCATTCTGTCATCAGCAGCCCCTGGCAAGGTGGCAAGGGTGATGTTGTTCAAGACTTTGTTAATGCAGCCACTGCGCAGGGAATTGATGTAGGGATCTACCTTTCACCTTGGGATAGACATGACCCTAGATATGGCAATGATTTGCTTTACAACCAATATTACTTGGCTCAATTGCAAGAGTTGCTCAAAAAGTATCAAAATGTTAGAGAAATTTGGTTCGACGGAGCAAAGGGTGCCCAGGCAAAAAATATGTCCTATTACTTTTCAGATTGGTTTTTTATGGTGAAAGAGTTGCAGAGTTCCATCAATATCTTCTCCGATGCCGGTCCTGATGTTAGGTGGGTGGGAGAAGAAACAGGTTCTGCAGGATACACATGTTGGTCTACCATTAATCGAACCTCTCTATCGATTGGAAATGCTACCATCACTCAGTACTTGAGCACGGGTGATCCAAAAGGGACAGATTGGCTACCAGCGGAATGTGATGTCTCAATTCGACCGGGATGGTTTTGGCATAAGTCAGAATCACCAAAAAAGTTGAGCGAGTTACTTGATATTTATTACAATTCGGTTGGGAGAAACTGTGTGTTACTTCTCAATGTACCTCCTAATACAAGTGGCCTTATAACAGATGTTGATGCTCAAAGATTGAAAGAGTTTAGAAGTGCAATTAGCACTATTTTCCATCAGAATCTTGTTGAAGATTGTGCTATTAAAGTTAGCAGCCAAAGAGGAGGTTTCGGACCAGAAAACATGCTAGACAGTGACCACTTGTGGTCATATTGGGCCCCAGAGGACGATGATGGTGAAAAGGACCATTGGATTGAAATTTGCGCGAAGGAAGGGAATTTTTTGAGATTCAACGTGATTAGAATACAAGAGGCAATTGGACTTGGTCAAAGGATCAAACGGCATGAAATCTATGTGGATGGTAAATTGATCCTGAAGGCAACAACAGTGGGTTACAAGAGGCTTCATAGGCTTGACAAGGCTGAGATGCAGGGTCGTGTTGTGAGGATCAGAATCAGAAAAGCGAGAGCAGTGCCTCTTATTTCTTCTATTGGCTTGTATTTTGATCCTTTTTGGCACGCTAAATTTATTGTTACCTGA 1476 0.437 MVRLRLWRSSLLIAFTLLFHQVGFCTSWSVQTPTPPLPVLPLPTYSQLKWQQREIIMFLHFGVNTFTDREWGTGQENPAIFNPTALNTTQWATVVADAGISLMILTAKHHDGFCLWPSKYTDHSVISSPWQGGKGDVVQDFVNAATAQGIDVGIYLSPWDRHDPRYGNDLLYNQYYLAQLQELLKKYQNVREIWFDGAKGAQAKNMSYYFSDWFFMVKELQSSINIFSDAGPDVRWVGEETGSAGYTCWSTINRTSLSIGNATITQYLSTGDPKGTDWLPAECDVSIRPGWFWHKSESPKKLSELLDIYYNSVGRNCVLLLNVPPNTSGLITDVDAQRLKEFRSAISTIFHQNLVEDCAIKVSSQRGGFGPENMLDSDHLWSYWAPEDDDGEKDHWIEICAKEGNFLRFNVIRIQEAIGLGQRIKRHEIYVDGKLILKATTVGYKRLHRLDKAEMQGRVVRIRIRKARAVPLISSIGLYFDPFWHAKFIVT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01051 491 FunFam Putative alpha-L-fucosidase 1 36 355 - -
Spst10g01051 491 Gene3D - 359 480 - -
Spst10g01051 491 SUPERFAMILY Galactose-binding domain-like 348 464 IPR008979 -
Spst10g01051 491 PRINTS Glycosyl hydrolase family 29 signature 150 169 IPR016286 GO:0004560|GO:0006004
Spst10g01051 491 PRINTS Glycosyl hydrolase family 29 signature 304 325 IPR016286 GO:0004560|GO:0006004
Spst10g01051 491 PRINTS Glycosyl hydrolase family 29 signature 102 118 IPR016286 GO:0004560|GO:0006004
Spst10g01051 491 FunFam Alpha-L-fucosidase 1 362 479 - -
Spst10g01051 491 SUPERFAMILY (Trans)glycosidases 37 347 IPR017853 -
Spst10g01051 491 Gene3D Glycosidases 37 356 - -
Spst10g01051 491 SMART alpha_l_fucos 32 380 IPR000933 GO:0004560|GO:0005975
Spst10g01051 491 PANTHER ALPHA-L-FUCOSIDASE 18 486 IPR000933 GO:0004560|GO:0005975
Spst10g01051 491 Pfam Alpha-L-fucosidase 79 342 IPR000933 GO:0004560|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01051 Spst-Chr10 11257862 11259880 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01051 K01206 - gmx:100805382 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01051 10 11257862 11259880 Spst10g01051 10 11257862 11259880 ECH