Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01012 ATGGCGGACGAAGACTATGATGACATGGACATGGGGTACGAGGATGAGCCACCAGAACAACAAATTGAGGAAGGCGCAGAGGAGGATCTGGAAAACAACAAAACCGACGATTTAACTGGAGATTCTATTGACATTGAGGATAAGGAAGAGGGACAACCAGATGAGCGTTCAAGAAAGACCTCGAAGTATATGACTAAGTATGAACGAGCTAGGATTTTGGGTACCCGTGCACTTCAAATCAGTATGAATGCACCTGTCATGGTTGAGTTAGAGGGTGAAACTGATCCACTTGAGATTGCTATGAAGGAGCTTCGAGAGCAGAAAATACCCTTTACAATCCGGCGCTACTTGCCAGATGGAAGCTACGAGGATTGGGGGGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTAA 432 0.463 MADEDYDDMDMGYEDEPPEQQIEEGAEEDLENNKTDDLTGDSIDIEDKEEGQPDERSRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELREQKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01012 143 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 65 79 IPR020708 GO:0003677|GO:0003899|GO:0006351
Spst10g01012 143 PIRSF RPB6 1 134 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Spst10g01012 143 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 1 133 - -
Spst10g01012 143 SMART RNA_pol_Rpb6_2 58 111 IPR006110 GO:0003677|GO:0003899|GO:0006351
Spst10g01012 143 Gene3D - 2 134 IPR036161 GO:0003677|GO:0003899|GO:0006351
Spst10g01012 143 MobiDBLite consensus disorder prediction 32 62 - -
Spst10g01012 143 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 2 134 - -
Spst10g01012 143 SUPERFAMILY RPB6/omega subunit-like 2 133 IPR036161 GO:0003677|GO:0003899|GO:0006351
Spst10g01012 143 Coils Coil 87 107 - -
Spst10g01012 143 MobiDBLite consensus disorder prediction 1 31 - -
Spst10g01012 143 Pfam RNA polymerase Rpb6 60 111 IPR006110 GO:0003677|GO:0003899|GO:0006351
Spst10g01012 143 PIRSF RpoK/RPB6 1 134 IPR006111 GO:0003677|GO:0003899|GO:0006351
Spst10g01012 143 MobiDBLite consensus disorder prediction 1 62 - -
Spst10g01012 143 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 62 117 IPR006111 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01012 Spst-Chr10 10769533 10771639 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01012 K03014 - gmx:100794926 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01012 10 10769533 10771639 Spst10g01012 10 10769533 10771639 ECH