LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst10g00992	ATGGGAAAGCAAAAGCAACAAGTAATCTCCCGGTTCTTCGCTCCCAAACCCAAATCTAGTTCTCCTCCTTCTTCTCCCCGTCCCAACCCTCCCACATCCACTCACACTTCCACTTCCACTCCCAAAATCTCTGCCACCGTCACTTTCTCCCCTTCCAAACGCTGCCTTACGTCCCACCTCACACCCCCTCGCAAGCACCAGAAGATTCTCGAACCTTCTCCCCCTTCACTCCACCAGCGCTTCCTTCACAAGTTTCTCGAACCTTCCTCCCCTCAGCACCCTCCTCTCCCTTCCTCTTCCAAACCCATAACCTACACTCCTCTCGAACAACAGGTCCTCCACCTCAAAGCCAAACACCCCGATGTTCTCCTCATGGTTGAGGTCGGTTACAGGTACCGTTTCTTCGGCCAAGACGCCGAACACGCCGCCAGACTCTTGGGCATTTACGCGCATATGGATCATAATTTCTTAAGTGCTAGCATACCAACTTTTCGACTGAATGTTCACGTCAGGAGGCTCGTCAGTGCTGGGTATAAGGTCGGTGTGGTCCGGCAAACCGAGACCGCCGCCATCAAGGCCCACGGGTCCAACCGCTCCGCGCCTTTCGGGCGCGGGCTGTCGGCGCTCTACACCAAGGCCACGCTTGAGGCGGCGCCGGAGATTGGAGGAGGGGAGGACGGATGTGGTGGAGAGAGTAATTACTTGCTGTGTGTGGTGGAGAAGAGTGTTGTGGGGGAGAAGGGGAATTCTGGGGTGGAGGGTGGTGTTGATGTGAAGATTGGGATTGTAGCGGTGGAGATTTCGACTGGGGATGTTGTTTATGGGGAGTTTTGTGATGGTTTTCTGAGGAGTGCGCTTGAGGCTGTTATTGTGAACTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCAAAGCAAACAGAGAAGTTATTGCTGGATTTTGCTGGACCTTCCTCAAATGTTCGTGTGGAGCGTGTTTCACGAGATTGCTTCACTGATGGGGGTGCTCTATCTGAAGTTATGACCTTGTTTGAGAACATGCATTTGGATAGTCTATCAGATTCAATTGAAAGCAATGATTTGACTGAGCACAGAAGTCAGCAGTTAGTAATCAAGGAGGTGATGAACATGCCAGATTTGTCTGTCCAAGCTTTGGCCTTAACTATTCGTCATTTAAAGGAATTTGGTTTTGAAAGAATTTTGTGTTCAGGAGCTTCGTTAAGGCCTTTCTCAAACAATATGGAAATGACCCTCTCAGCTAATACACTTCAACAACTGGAGGTTTTAAAAAATAACAGTGATGGATCGGAGATTGGTTCCTTGCTGCAAATTATGAATCACACTCTAACTATATATGGTTCCAGACTTCTTAGGCATTGGGTATCTCACCCATTATGTGATCGAACCTTAATTTCTGCTCGACTTCATGCTGTGTCCGAAATTGCAGAGTCCATGGGATCTTGTAATGGTACAAAGAATGCTGGTCATGTTGAAGAAGATCTTGATATAGCAATCGTGCAACCTGAGTTAGCACACATACTTTCATTGGTTTTGACAAGTCTTGGCCGTGCACCTGATATACAACGTGGAATTACAAGAATTTTCCATTGCACTGCTACCCCATCTGAGTTTGTTGCAGTAATTCAAGCTATTTACTCTGCTGGAAAACAGCTACAACAACTTAAAATAGGAGAGGGGAATAATAACACATTGCGCTCTAATCTGTTAAAAAAGTTAGTTTTGACTGCTTCCTGTGACAGTACTATTGCCAATGCTGCAAGATTGCTGTCATCTTTAAACATAGACTCTGCTGATCAAGGAGATCTAACAAAATTGATCATTGCATCAGATGGACAATTTCCAGAGGTCATTAGAGCTCGTAAAAATTTCAAGCTGGCAGTGGAACAATTAGATTCGCTGATTGACTTGTATCGCAAACGGCTTAGAATGCAAAATTTGGAATTTATCAGTATTTCTGGAACAACTCATTTGATTGAGTTATCAACTGATGTTAAGGTTCCTTCAAACTGGGTCAAGGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGACAAGTTTTCGTTAGCAAGAGAGGAGCTCACTGTTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGACTTCAGTAAACACTATGCTGAGTTTCAAGCTGCTGTTCAAGCACTGGCTGCTTTAGATTGTCTGCATTCACTTGCCACTCTTTCACGAAATAAGGGTTTTGTTCGCCCTGTGTTTGTAGATGATCAAGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACCACCTTACAAGATAATTTTGTCCCAAATGATACAAACTTGCATGCAGATGGAGAGTACTGTCAGATTGTAACTGGACCCAATATGGGTGGAAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGTTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGATAGGATCTATACCCGAATGGGTGCTTCTGACAGTATTCAACAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTCCATTGTTGTACAGAACATTCACTGGTTATTATTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCCTTGCTCATTCGACGTTGCATTATCTTCTGAAGCAAAAAAGAAGCATGGTTCTCTTTGTCACTCACTATCCAAAGATTGCCAGCCTGGCAACTGAATTTCCTGGCTCTGTGGCAGCATACCACATGTCACATCTGACTTCACACGATGCAAGTAAAAATGCCAACTTGTATAATGATGTCACTTATCTGTACAAGCTCGTACCTGGTGTTTCAGACAGGAGTTTTGGATTTAAAGTTGCCCAGCTTGCACAGTTGCCTTCACATTGCATCAGTCGAGCCATTGTCATGGCTTCCAAATTAGAAGCACTAGTAAATAGTAGAATACATAGTAGATCGAGAAAGAAGCTACTATTGGGTACGCTGGGGATTGTTCAAGAGCAACAACAGCTTATGGCTCAACCACATGATCGTCCACTCCAAGAGTTTGGTATAGCTTACAAAGATTTCTATTTAAACTTAAAAGCTGCAATACAAGATGATGACTGTGCGAAAAGCTTTCAGCTGTTGGAACATGCTAGAAGCATTGCTAAGAAATTAATCGGTGGTTGA	3246	0.4479	MGKQKQQVISRFFAPKPKSSSPPSSPRPNPPTSTHTSTSTPKISATVTFSPSKRCLTSHLTPPRKHQKILEPSPPSLHQRFLHKFLEPSSPQHPPLPSSSKPITYTPLEQQVLHLKAKHPDVLLMVEVGYRYRFFGQDAEHAARLLGIYAHMDHNFLSASIPTFRLNVHVRRLVSAGYKVGVVRQTETAAIKAHGSNRSAPFGRGLSALYTKATLEAAPEIGGGEDGCGGESNYLLCVVEKSVVGEKGNSGVEGGVDVKIGIVAVEISTGDVVYGEFCDGFLRSALEAVIVNLSPAELLLGDPLSKQTEKLLLDFAGPSSNVRVERVSRDCFTDGGALSEVMTLFENMHLDSLSDSIESNDLTEHRSQQLVIKEVMNMPDLSVQALALTIRHLKEFGFERILCSGASLRPFSNNMEMTLSANTLQQLEVLKNNSDGSEIGSLLQIMNHTLTIYGSRLLRHWVSHPLCDRTLISARLHAVSEIAESMGSCNGTKNAGHVEEDLDIAIVQPELAHILSLVLTSLGRAPDIQRGITRIFHCTATPSEFVAVIQAIYSAGKQLQQLKIGEGNNNTLRSNLLKKLVLTASCDSTIANAARLLSSLNIDSADQGDLTKLIIASDGQFPEVIRARKNFKLAVEQLDSLIDLYRKRLRMQNLEFISISGTTHLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVVTALDKFSLAREELTVACRAAWNSFLRDFSKHYAEFQAAVQALAALDCLHSLATLSRNKGFVRPVFVDDQEPVQIQICSGRHPVLETTLQDNFVPNDTNLHADGEYCQIVTGPNMGGKSCYVRQVALIVIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSHILHCCTEHSLVIIDELGRGTSTHDGMALAHSTLHYLLKQKRSMVLFVTHYPKIASLATEFPGSVAAYHMSHLTSHDASKNANLYNDVTYLYKLVPGVSDRSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHSRSRKKLLLGTLGIVQEQQQLMAQPHDRPLQEFGIAYKDFYLNLKAAIQDDDCAKSFQLLEHARSIAKKLIGG	1081

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst10g00992	1081	Gene3D	-	756	1031	IPR027417	-
Spst10g00992	1081	MobiDBLite	consensus disorder prediction	1	74	-	-
Spst10g00992	1081	FunFam	DNA mismatch repair protein Msh3	598	724	-	-
Spst10g00992	1081	PIRSF	Msh6	96	1057	IPR017261	GO:0006298\|GO:0030983
Spst10g00992	1081	SMART	DNAend	437	783	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	Gene3D	MutS, connector domain	229	416	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	SMART	mutATP5	800	997	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	Gene3D	-	419	749	-	-
Spst10g00992	1081	Pfam	MutS domain I	106	216	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	SUPERFAMILY	DNA repair protein MutS, domain II	231	353	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	MobiDBLite	consensus disorder prediction	31	57	-	-
Spst10g00992	1081	SUPERFAMILY	DNA repair protein MutS, domain III	421	753	IPR036187	-
Spst10g00992	1081	Pfam	MutS domain II	233	318	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	FunFam	DNA mismatch repair protein MSH3	756	1028	-	-
Spst10g00992	1081	Pfam	MutS domain III	422	748	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	SUPERFAMILY	DNA repair protein MutS, domain I	100	214	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	881	897	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	110	1020	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Spst10g00992	1081	Gene3D	-	598	724	-	-
Spst10g00992	1081	FunFam	DNA mismatch repair protein	96	225	-	-
Spst10g00992	1081	FunFam	DNA mismatch repair protein	229	414	-	-
Spst10g00992	1081	Pfam	MutS domain V	803	1000	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	Gene3D	DNA repair protein MutS, domain I	98	221	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Spst10g00992	1081	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	756	1000	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst10g00992	Spst-Chr10	10583559	10591392	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst10g00992	K08736		-	gmx:100789883	1756.11

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst10g00992	10	10583559	10591392	Spst10g00992	10	10583559	10591392	ECH