Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00989 ATGGTGAAGGCAACTATAGTTGGAAGGGTAAGCGATGGATTGCCTCTAGCACAAGGACTGAGATATATGAATGAAGAGAATGGATATCTTTCATGTTACAGGCAACAAGCAGAGTTTATTCTCCAAGAAATTTCAAGGGGAGTATTAACAGCTTCCAAGATGACTATTCATGTTGATCATTTCTGCTTCAACTACTTGGTCGAGAACGGAGTTGTTTTCATTGTCTTGTGTGAGTCCACATATCCAAGAAAACTGGTTTTTCATTACCTACAAGATATTCAAAAGGAGTTTGAGAAGTTTGATAAAACTCTCATAGACAAAATCACAAGGCCATACAGCTTTGTCAAATTTGATGGTATAATTGCAAACATTAGTAGACAGTACATTGACACAAGAACTCAGGCCAACCTATCTAAACTTAATGCTAACCGGAAACAAGATTTAGATGTTGCCACTGAAGATATTTATAACATTTTAGAAAGGAAGAGAAATTCAGAAACAATGAGAAGGTTATCAGTTACTCCTCAAGCTGACTCCACAATATGGTGTTCTGCACGCCTTGAGGTGATTGCTTTGAAATGGACACCTATTATGATCCTTGTAATTACTTCTGTGGCTCTTCTATGGGCTAGCTTAGTTCTCACAGATGAATTTATTATTTCAAGCTGGTGA 672 0.372 MVKATIVGRVSDGLPLAQGLRYMNEENGYLSCYRQQAEFILQEISRGVLTASKMTIHVDHFCFNYLVENGVVFIVLCESTYPRKLVFHYLQDIQKEFEKFDKTLIDKITRPYSFVKFDGIIANISRQYIDTRTQANLSKLNANRKQDLDVATEDIYNILERKRNSETMRRLSVTPQADSTIWCSARLEVIALKWTPIMILVITSVALLWASLVLTDEFIISSW 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00989 223 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Spst10g00989 223 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Spst10g00989 223 CDD Longin 3 128 IPR010908 -
Spst10g00989 223 Gene3D Longin domain 1 129 - -
Spst10g00989 223 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 210 IPR044565 GO:0005484|GO:0006888|GO:0006890
Spst10g00989 223 SMART Longin_2 36 120 IPR010908 -
Spst10g00989 223 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00989 Spst-Chr10 10573175 10574544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00989 16 179 Miscellaneous Gene Families AT3G54300 24.064 2.83e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00989 K08517 - gmx:100781527 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00989 10 10573175 10574544 Spst10g00989 10 10573175 10574544 ECH