Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00982 ATGAATTCAATAATCGTTTTAGGTCCAAAGATGGTCCACAAAATTCCCCATTCTTTGATTATTTTGCGGAGATTATGTAGCCATCGGTTTGATGGTGATGGCTTTGAATGCATTGAGGAGCCTTTGAAAAAACTAGGATTAGATTGTGATTCTGCTGTGGATTTAAGACTCCGTTTAAACGAGGATTGCGGTTATAACCAAAAGCAGTTTTCACTTAGAAAAGGGTTCTTAGAAAATGTTAAGTTAGATGCTAAGAGGGTCCTTGATGTTCTCCGGCAAGACGGTCCCGGTCTTGACGCGAGGTTGGTTTTGGGTGAGTTGCATGTTAGGCCATCAGGGCTTCTTGTGAGGGAGGTTCTCTTAGGAATTTTGAAGAACATAAATTGTGAGAATAAAACTAGGTGCGCAAAGCTGGCATACAAGTTTTTTGTTTGGTGTAGTCAGCAAGAGGGTTATCGGCACACTGCGAATGCATATCACTTAGTTATGAACATATATGCTGAGTGTGAGGAGTTTAAGGCATTGTGGAGATTGGTTGATGAGATGATTGAGAAAGGCCTTCCGGCTACAGCTCGAACTTTCAATATCTTGATACGAACTTGTGGTGAGGCGGGATTAGCTAAGAAATTGGTGGAGAGGTTCATAAAATCAAAGACGTTTAACTTTAGGCCTTTTATGCACTCGTACAATGCAATCCTACATGGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAGTGGGTTTATCAGCAGATGTTACTTGATGGATATTCTTCAGATATTTTAACTTATAATATTATCATGTATGCCAAGTACAGACTTGGAAAGTTGGATCAGTTCCACAGATTGTTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCATACCTTTAATATTCTTCTTCATGTTCTTGGGAAAGGGGACAAACCGCTTGCAGCTCTCAATATTTTAAATCACATGAGAGAAATGGGTATAGATCCAACTGTGCTTCATTTCACTACATTAATAGATGGACTCAGCAGAGCTGGGAATCTGGATGCTTGCAAGTATTTTTTTGATGAAATGATAAAGAATGGATGTATGCCAGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCTGGTGAGCTCGAGAAAGCCCTGGAAATGTATGAAGATATGATTTCTAGAGAACAAATTCCAAATGTTTTTACATACAATTCCATTATTCGGGGATTATGCATGGCAGGAAAATTTGATGAAGCATGCTCAATGCTCACGGAAATGGAAACCAAAGGTTGTAGTCCAAACTCCGTTGTCTATAATACTTTAGTGAGTAGTTTACGTAATGCAGGAAAGACTGCTGCTGCTCATGAAGTGATAAGACAGATGACAGAGAGGGGGAAGTATTCCCACGTATATTCAAGATACAAAGGGTATAACTGA 1440 0.3924 MNSIIVLGPKMVHKIPHSLIILRRLCSHRFDGDGFECIEEPLKKLGLDCDSAVDLRLRLNEDCGYNQKQFSLRKGFLENVKLDAKRVLDVLRQDGPGLDARLVLGELHVRPSGLLVREVLLGILKNINCENKTRCAKLAYKFFVWCSQQEGYRHTANAYHLVMNIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNFRPFMHSYNAILHGLLVLNQYKLIEWVYQQMLLDGYSSDILTYNIIMYAKYRLGKLDQFHRLFDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNILNHMREMGIDPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCMPDVVAYTVMITGYVVAGELEKALEMYEDMISREQIPNVFTYNSIIRGLCMAGKFDEACSMLTEMETKGCSPNSVVYNTLVSSLRNAGKTAAAHEVIRQMTERGKYSHVYSRYKGYN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00982 479 Pfam PPR repeat 228 256 IPR002885 -
Spst10g00982 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Spst10g00982 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Spst10g00982 479 Gene3D Tetratricopeptide repeat domain 115 237 IPR011990 GO:0005515
Spst10g00982 479 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 290 470 - -
Spst10g00982 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Spst10g00982 479 Pfam PPR repeat family 364 412 IPR002885 -
Spst10g00982 479 Pfam PPR repeat family 260 306 IPR002885 -
Spst10g00982 479 Gene3D Tetratricopeptide repeat domain 396 467 IPR011990 GO:0005515
Spst10g00982 479 Gene3D Tetratricopeptide repeat domain 247 395 IPR011990 GO:0005515
Spst10g00982 479 NCBIfam pentatricopeptide repeat 367 400 IPR002885 -
Spst10g00982 479 NCBIfam pentatricopeptide repeat 437 466 IPR002885 -
Spst10g00982 479 NCBIfam pentatricopeptide repeat 334 366 IPR002885 -
Spst10g00982 479 NCBIfam pentatricopeptide repeat 263 295 IPR002885 -
Spst10g00982 479 NCBIfam pentatricopeptide repeat 402 436 IPR002885 -
Spst10g00982 479 NCBIfam pentatricopeptide repeat 297 330 IPR002885 -
Spst10g00982 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Spst10g00982 479 SUPERFAMILY HCP-like 225 424 - -
Spst10g00982 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Spst10g00982 479 Pfam PPR repeat 325 357 IPR002885 -
Spst10g00982 479 Pfam PPR repeat 430 463 IPR002885 -
Spst10g00982 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Spst10g00982 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00982 228 473 Glycosyltransferase AT1G05670 30.081 4.61e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00982 - - ccaj:109794849 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00982 10 10534769 10536208 Spst10g00982 10 10534769 10536208 ECH