Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00962 ATGGTTACACAGCACGGCATCAAACTCGCCGTCCACCTCATCACCAATCACTTCGGCAATCTCGTCGGGGTAATTCTCTCGCTTTCTCGTCTCTCTGATTTATTTTGCAGTGGTATTGATATTGAAATTTTGTGTGTGCAGAAAGTATGCGAAAACCTATTTAGCCATGGATCCCTCACTTTGGATCAATTGATTCGCTTCACAGAGCTTACTAAGGACCAGGTCAAGAACTCCCTACTCGTCTTAGTTCAACACAATTGTTGCCAAGCATTTGTTTCTGCTCCTGAAGATGACGATGATGATGCAGACAGATTGAGAGTTAGAACTCAGTACCTGGTGCTGTTTGATAACATAATCCACCGATTGAGATTTCCCAAATTCTTGGAGACTGTAACGCGGACGCTTGATGAAGAATGTGTGGAGCTTCTTGATGGATTGCTTCGTGATGGTAGGCTTACCCTGAAACAGATGGTTGACAGAGCAAGTCAAGGGAAAGGCAAGTGTTTTATGATGCCTGTCATAGAAAATGCCGTGGAAACAAAAGTTGTACGAGAGATACTTTGTAAGCTTTTAACAGCTAGACTTGTTGAACGCTGCCCTGCCCCTGAGCCAGTTGTTTCTACTTCATTTAAAGAAACTACTACTAGGAAGCGGGGTGCTAAGTCTGCCAAGATATTTGAAGCACCAGAGACATTAGAACAACGCGTTTTAGAAGCAGCAGTGCCTGGGGATGCAATCAGATATTCATTCACTGCAGATATGGGATCTAATGCTGACCGAGAAACAAATTCAGATGATGAACAAATGATTAGTGTTGAAGAGAATACAGCAAAAGAGGAGGAAATTCTTTGGCGTGCAAATTTTGAGGAGTTTGTTCGTCATCTTAGGCATAAGGCATTGATTGAGAATATAAGAACTCAGCATGATGATGGAACTGCTACTGTCTTAAGTGCAGTATTGGAGGCAACAAAAACTGTAGAGAAAAAAGTGAAACTGGAGAATTCAGTTCCCTTGTCACTGGATACAATTACCGCAGAGGTGATGAAGACTGATACAGGACGAACGATGACCATGGATCGTATTAGAGCTTCCCTTAGCCAGTTGGGCTGTTCACAGAGGATGATTGTAGATGATGCATATAGTATTGATTTGAAGAAAATAATTGAACGTGCTCGAAATGAAGAGGTTGAGTCAATTGTGTTGAAAAGGTATGGAAGGGATGCCTACAGAATGTTCAGGCTACTGTCAAAGGATATTGGTTTTCATGACACAGATCAGATAGCAGCATCGACTCTGGTTGAGAAGAAGGAAGCTCCAAAGTTGCTATATAAGTTATGGAAGGACAATTACTTGTATATGGAGAAAGTAGTTGCAACCGGTGTCAAGCAAATAACTATTTTGATGTGGAAAGTCAATAAACCTCTGCTTTTGGAACATGTACTGGACGAGATGTACCACGCTGCCTTAAATTTGAGCCTAAGAATGGCTTTTGAGCAGGAAAAGGATGAAGAGCTTTTAAATGTTCCTAAAGACAAGCTTAAGGAGCCCGGGCCACTGCAGAAGAAATACAAACGGCTACTAAATGTCTGGTTACTCCTGGGATCATCATTGATGAAGCTCGATGAAGCTCTCATGCTTTTCCATGACTTCTGA 1653 0.4192 MVTQHGIKLAVHLITNHFGNLVGVILSLSRLSDLFCSGIDIEILCVQKVCENLFSHGSLTLDQLIRFTELTKDQVKNSLLVLVQHNCCQAFVSAPEDDDDDADRLRVRTQYLVLFDNIIHRLRFPKFLETVTRTLDEECVELLDGLLRDGRLTLKQMVDRASQGKGKCFMMPVIENAVETKVVREILCKLLTARLVERCPAPEPVVSTSFKETTTRKRGAKSAKIFEAPETLEQRVLEAAVPGDAIRYSFTADMGSNADRETNSDDEQMISVEENTAKEEEILWRANFEEFVRHLRHKALIENIRTQHDDGTATVLSAVLEATKTVEKKVKLENSVPLSLDTITAEVMKTDTGRTMTMDRIRASLSQLGCSQRMIVDDAYSIDLKKIIERARNEEVESIVLKRYGRDAYRMFRLLSKDIGFHDTDQIAASTLVEKKEAPKLLYKLWKDNYLYMEKVVATGVKQITILMWKVNKPLLLEHVLDEMYHAALNLSLRMAFEQEKDEELLNVPKDKLKEPGPLQKKYKRLLNVWLLLGSSLMKLDEALMLFHDF 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00962 550 FunFam RNA polymerase III subunit RPC82 family protein 287 381 - -
Spst10g00962 550 Pfam RNA polymerase III subunit RPC82 186 389 IPR008806 GO:0003677|GO:0006351
Spst10g00962 550 FunFam DNA-directed RNA polymerase III subunit rpc3 115 207 - -
Spst10g00962 550 Gene3D - 115 208 IPR036388 -
Spst10g00962 550 Gene3D - 384 472 IPR036388 -
Spst10g00962 550 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 1 550 IPR039748 GO:0003697|GO:0005666
Spst10g00962 550 Gene3D - 287 380 IPR036388 -
Spst10g00962 550 FunFam RNA polymerase III subunit, putative 385 472 - -
Spst10g00962 550 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 45 92 IPR013197 -
Spst10g00962 550 Gene3D - 44 97 IPR036388 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00962 K03023 - gmx:100784750 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00962 10 10349658 10356264 Spst10g00962 10 10349658 10356264 ECH