Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00904 ATGGAGAAGATGCGTCATGCGGAGGAGCTGGTGAGGGAGTTTCTGGTGTTCCGCGGCTTCACCAACACCCTCGAGTCCTACGAGAACGAATTGCGCACCGACATCGGAAAGGGCTTCGAGGTCGACAAGATCCTCGACCTCATCTTCTCCGTCTACGTTCCCAAGTTCCACGCCGATAAGCTTGTTGCTCTCCTCGGGTTCTTCAAACACTACCTCTCTTCCTCCTCCGACACGCCGCTCGTGACCACGCTCTCGAAGTTGGAAGCTTCTCTTCTACGCTTCTACGTCGTCCACGCTGTGCAGTGCAACCGCAACGACAAGGTCGTTGAGTTCTTCGCGCTCTACGGCACCGAATTGTTGCAGAGGTCACAAGATTGGACTCAATGGTTCGCGATTCCTTATAAGAAGAACCCGCACTTGGATCCCGAGTTTCGGGTTTTTTTCTCCAAGGAGTGGTATCAGGCTTTGCATCTTTCTTCTAGAAACTTCTTCAGCGAGGTTTTCAACGCTACTCATATCCTTCACATTAATTCTGTTCATAGCTCTAAATTGGTTAGTTCGGAGATGAATACTAATAATATACTCAAAAGAGATATCGTACATTTAAATCTGAAGTTGTCGCAACTTCAGGCTTTGGTCGATGAGAAAGAGGCACAGTTACGTCAATTTAGAAGTATGGAAGGGAGTACTGGTTCATCGAGCAATTTGCGTGAAGAAGGTGCTAGTACGGTGAAAAATTCTCCCGATGTTTTTCCAACTAGCATTTCACAAGTAAGTCATATCGACATTAGCCACGATTCAGCAGTGGGTGAACTTGTAAATGTTCATTCCGAGTTGATTGGCTCCACATCTTGTGATGATTCAACTTTTCTATCAAATGACTGTCTGAGGAATGGCGGAGCTGACAATGCCAGTGTAAAAGAAAACGATGGGGATGAAGATTTTGCAGAGGTCAAAGTAGAGCACCAGGAGACATTTTTGGGGCACACCAGTCCAATCAGTCGATGTCGCTTCTCTGCATCTGGAAACAATATTGCCAGTGCTTCTCTGGATGGAACTGTCAGGATATGGACATATGATACATCAACTCCAGTGTCTAGAAACGCAACTATATATTGTGGCACTGAAATTTTGTCACTTGACTGGGAATGTAAATCAGACCGCTTGCTTCTTATAGGTACATCCGATGGGTGCATTAAAGCATGGAATGTGGATGCAAAGAGAGTTGTCTGTGATCTCAACACAACTGAAGCGTTTCCAAGTGTACTGGATATAAAGTGCAGTCCTGTGGAACCGATTTTTGTGTCTGCAGCAGCATCTGGAGGGGCTGGTTCCAACTATGTTGACAACCTGGGTTTTGCTTCGCTAACTGTATGGAACATGAAGACTTGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCCCCAGCAATTACTTCTCTATGCTTTAATCACAATGGAAAGATTTTGGCAGCTTCTGCAGTTGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGCTGGCCAGCACATGATTCTTCCATCAGTTCTATTCTTTTTGGACCAGACGAGACTAGCATTTTTAGCCTGGGCTCTGATGGGAAGATTTTTGAGTGGAGTTTGCAAAATCAAGGTCAAATCCTATGGTCGAGAGACTGTAGTAGGTATATTTGTAATTGCGGGCCTCTATCTACAGTCAGAAAAGCAAGCGGCCCCTTCATCTCTGGTGTTGTGTTTGGAATCTTGAAGTACTTCTCTGCCCAAGCCAACCATCCAATTGGATCACTCATCAAAATTGGGCAATTCAACCATCTGACTTCCTGGATCTTGGTCACCTGCGGTGGAGGGCAGAGGTTCTGTTACCCCCTCAATGGTTCAAAATATTGCAGACATGAGATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCAGTTAGAGCACCCATATATCAGGTTCATGGGCATCTAAGTGGATGGAGAACACTTCCGCACGGTGCTCCTATTACTGCTGTGGATTGGCATCCTACCCTACCCATTTTCTTGACTGGGTCAGCTGATAACTCTGTCCGAGTAACATCTTTGTCATAG 2118 0.457 MEKMRHAEELVREFLVFRGFTNTLESYENELRTDIGKGFEVDKILDLIFSVYVPKFHADKLVALLGFFKHYLSSSSDTPLVTTLSKLEASLLRFYVVHAVQCNRNDKVVEFFALYGTELLQRSQDWTQWFAIPYKKNPHLDPEFRVFFSKEWYQALHLSSRNFFSEVFNATHILHINSVHSSKLVSSEMNTNNILKRDIVHLNLKLSQLQALVDEKEAQLRQFRSMEGSTGSSSNLREEGASTVKNSPDVFPTSISQVSHIDISHDSAVGELVNVHSELIGSTSCDDSTFLSNDCLRNGGADNASVKENDGDEDFAEVKVEHQETFLGHTSPISRCRFSASGNNIASASLDGTVRIWTYDTSTPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGAGSNYVDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDGKIFEWSLQNQGQILWSRDCSRYICNCGPLSTVRKASGPFISGVVFGILKYFSAQANHPIGSLIKIGQFNHLTSWILVTCGGGQRFCYPLNGSKYCRHEMALDANGRRLLVTSSSVRAPIYQVHGHLSGWRTLPHGAPITAVDWHPTLPIFLTGSADNSVRVTSLS 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00904 705 SMART WD40_4 319 358 IPR001680 GO:0005515
Spst10g00904 705 SMART WD40_4 463 504 IPR001680 GO:0005515
Spst10g00904 705 SMART WD40_4 364 403 IPR001680 GO:0005515
Spst10g00904 705 SMART WD40_4 507 546 IPR001680 GO:0005515
Spst10g00904 705 SMART WD40_4 665 703 IPR001680 GO:0005515
Spst10g00904 705 Gene3D - 186 441 IPR015943 GO:0005515
Spst10g00904 705 Pfam Anaphase-promoting complex subunit 4 WD40 domain 473 526 IPR024977 -
Spst10g00904 705 SUPERFAMILY WD40 repeat-like 311 701 IPR036322 GO:0005515
Spst10g00904 705 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 361 - -
Spst10g00904 705 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 367 IPR001680 GO:0005515
Spst10g00904 705 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 671 705 - -
Spst10g00904 705 ProSiteProfiles Trp-Asp (WD) repeats profile. 514 549 IPR001680 GO:0005515
Spst10g00904 705 Gene3D - 442 597 IPR015943 GO:0005515
Spst10g00904 705 Coils Coil 199 226 - -
Spst10g00904 705 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 705 IPR001680 GO:0005515
Spst10g00904 705 Gene3D - 598 705 IPR015943 GO:0005515
Spst10g00904 705 Pfam WD domain, G-beta repeat 668 701 IPR001680 GO:0005515
Spst10g00904 705 Pfam WD domain, G-beta repeat 323 357 IPR001680 GO:0005515
Spst10g00904 705 MobiDBLite consensus disorder prediction 224 248 - -
Spst10g00904 705 PANTHER OS05G0299300 PROTEIN 1 563 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00904 K24760 - gmx:100795332 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00904 10 9854871 9861780 Spst10g00904 10 9854871 9861780 ECH