Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00873 ATGCTGAGAATACGAATCGATAATCATCTGCAGGCCAGGGTAGCACAATGGCTTTTCCTCCGAAGATTCTCTCTGTGGTCGATGAAGAAGGAAGCAGAGTTAGAATCAGCACTCTCACGCAATCGACGATGGGTAGTGAACAACCAGATAAAGAACATCATCCTCCGCTACCCCAACAACGAAATCCCCATCGAAACCCTCCAGAAGAAGTTCAAAACCCTGGATCTCCAAGGCAAAGCCCTCAACTGGCTCTCCAAGTACCCATGCTGCTTCCAAATCCACGATAATCGCTGCCGTCTCACCAAACGCATGATGAACCTCGTCGCACAGGAACACTCCCTCATCGACTCCCTCCAACCCTTCTTTGCTCGATGCTTGGCCAAACTCCTCATGCTAACCCTCCACAACAGACTCACCGTCCTCAAAATTAACGAATTCAAACGCAGTTTCGGCTTCCCCGATGATTACGTAATCCGGATTCTCCCAAACTACCCTAATTTGTTCCGAATCGTCAACGAGAGCGGCAGGAGGAGCTCCATGGCCGTTGAGTTGCTGCATTGGGACCCTGACCTCGCCGTCTCCGCCGTCGAAGCCTCCGCTGTGAAGCTCGGAACACCGCCACGCTTTTCATGTTCCTTGCCGTCCAGTTGGGTGAAATCCTGGGAGAGATTTCGCGAATTTGACGAAATTCCTTACATTTCCCCGTATTCGGATCCTAGAGGTTTGGTGGAGGGGTCCAAGGAAATGGAGAAGAGGAATGTTGGTTTGGTGCACGAGTTGTTGTCTTTGACTCTTTGGAAGAAGGCTTCAATTGTGAAGTTGGGGCATTTTAGGAGGGAGTTCGTTTTGCCTGATAGGTTGAATGTGCTGTTGCTCAAGCACCCTGGCATTTTCTATGTTTCCAATAAGTATCAGATTTACACTGTGCTTCTCAGAGAGGCGTACGTTGGGTCTCAGCTTGTGGATAAGGATCCTTTGGTGGTTGTGAAGGAGATGTTTGGGGAGTTGATGCAGGAGGGGCTTCATGAGTACAATCAGAGGCGTCGCCTTTTCAATCTGGAAAAGAGGAGGAAGACAGGGATTCCATTGATTTGTGTAGATGGAGCAAATGGTAGAAGGAGAAATCACGAAGTTGATGAGGACAGTGATGGTAGTGGTGGAGATAGTAAGGTGGGAGGGTTGTTTGACCCTGAAGAAAGAAAACGGTTTTATAGAGTTCTTTTTGATGATGATGTTTCTTGA 1242 0.4847 MLRIRIDNHLQARVAQWLFLRRFSLWSMKKEAELESALSRNRRWVVNNQIKNIILRYPNNEIPIETLQKKFKTLDLQGKALNWLSKYPCCFQIHDNRCRLTKRMMNLVAQEHSLIDSLQPFFARCLAKLLMLTLHNRLTVLKINEFKRSFGFPDDYVIRILPNYPNLFRIVNESGRRSSMAVELLHWDPDLAVSAVEASAVKLGTPPRFSCSLPSSWVKSWERFREFDEIPYISPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKASIVKLGHFRREFVLPDRLNVLLLKHPGIFYVSNKYQIYTVLLREAYVGSQLVDKDPLVVVKEMFGELMQEGLHEYNQRRRLFNLEKRRKTGIPLICVDGANGRRRNHEVDEDSDGSGGDSKVGGLFDPEERKRFYRVLFDDDVS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00873 413 Pfam Plant organelle RNA recognition domain 29 340 IPR021099 GO:0003723
Spst10g00873 413 MobiDBLite consensus disorder prediction 374 395 - -
Spst10g00873 413 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 23 367 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00873 Spst-Chr10 9311102 9312343 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00873 - - pvu:PHAVU_007G079300g 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00873 10 9311102 9312343 Spst10g00873 10 9311102 9312343 ECH