Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00839 ATGGATCAAAGTCAAGGACGAGGAGACGAGTGGGATCAGTGTTATGTTCTATATTTTCCTCTATCTCTTTATCACCCAAACCGAATCCTCTTAGTTACAGTTCATCACATGCTGTATCCTATAACAGTGGATGTGCTGTTCCAAGTGTTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAAGCTCTCATCCAGTTTCAATCACGTCAGAGTGCTGTTAATGCAAGAACTACACTTCAGGGGCGCAATGTTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGGGACTTCACAAACCCAAATCTCCCTACCGAGCAGAAGGGCAGACCTTCACTACCTGGATATGGTGATGGAGGAAATATGTATGCTGCTCAAGGTTCTGGAGGCAGGGCAGTTGGATTTCCACAGATGGCAAATGCTGCAGCGATTGCAGCTGTCTTCGGGGGAGGTTTGCCTCCTGGAATAACTGGGACAAACGACAGGTGTACAGTTCTTGTATCAAATCTTAATTCTGATCGAATTGATGAGGATAAACTATTCAACTTGTTCTCTTTTTATGGGAATATTGTGAGAATTAAACTTCTCCGAAATAAACCAGATCATGCACTTATCCAGATGGGTAATGGTTTTCAAGCTGAATTGGCTGTACACTTTCTGAAGGGAGCCGTGTTGTTTGAGAAACAATTAGAGGTCAACTTCTCCAAGCATCCAAACATAATCCAAGGTGCTGAAACACATGAATATGTCAGTTCAAATCTCAACCGTTTCAACCGTAATGCAGCCAAAAACTACCGGTATTGCTGCTCCCCAACAAAGATTATCCATTTGTCCACACTCCCACAAGACATCACTGAGGAGGAGATTGTGAGCCTTGTAGAGGAGCATGGAACCATTCTCAACAGCAAAATCTTTGAGATGAATGGGAAAAAACAGGCTCTGGTTCAGTTTGAGAATGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCCAGCACACTTTCTGGCTCAAAGTTCTCTCGCTTGCAACGCAGGCAAGCAGGTGTGAACGGGGAAAGTTGCAGCGTGAAGTCATATTTCAATGAATTGTTCACGGTTATCTATGAGTAG 1182 0.4357 MDQSQGRGDEWDQCYVLYFPLSLYHPNRILLVTVHHMLYPITVDVLFQVFSPHGSVEKIVTFQKSAGFQALIQFQSRQSAVNARTTLQGRNVYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSLPGYGDGGNMYAAQGSGGRAVGFPQMANAAAIAAVFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSFYGNIVRIKLLRNKPDHALIQMGNGFQAELAVHFLKGAVLFEKQLEVNFSKHPNIIQGAETHEYVSSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDITEEEIVSLVEEHGTILNSKIFEMNGKKQALVQFENEEQATEALVCKHASTLSGSKFSRLQRRQAGVNGESCSVKSYFNELFTVIYE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00839 393 Pfam RRM-like domain 28 104 IPR021790 -
Spst10g00839 393 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 25 362 IPR006536 GO:0003723|GO:0005634|GO:0006397
Spst10g00839 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Spst10g00839 393 CDD RRM4_PTBPH3 289 361 - -
Spst10g00839 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 361 IPR000504 GO:0003723
Spst10g00839 393 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 26 351 - -
Spst10g00839 393 SUPERFAMILY RNA-binding domain, RBD 184 360 IPR035979 GO:0003676
Spst10g00839 393 SMART rrm1_1 31 100 IPR000504 GO:0003723
Spst10g00839 393 SMART rrm1_1 297 367 IPR000504 GO:0003723
Spst10g00839 393 SMART rrm1_1 187 256 IPR000504 GO:0003723
Spst10g00839 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 271 - -
Spst10g00839 393 Gene3D - 27 131 IPR012677 -
Spst10g00839 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 260 IPR000504 GO:0003723
Spst10g00839 393 Gene3D - 279 374 IPR012677 -
Spst10g00839 393 Gene3D - 180 278 IPR012677 -
Spst10g00839 393 MobiDBLite consensus disorder prediction 117 142 - -
Spst10g00839 393 SUPERFAMILY RNA-binding domain, RBD 30 127 IPR035979 GO:0003676
Spst10g00839 393 CDD RRM3_PTBPH3 185 260 IPR034797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00839 Spst-Chr10 8935387 8944008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00839 K14948 - gmx:100819672 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03391 4 74143198 74150166 Spst10g00839 10 8935387 8944008 PCT