Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00306 ATGGATTCTGAAAAGAGAATGAGAGGTAGCTGTGACGCCGCTGCTGTTGCTGCTTCTGTTTGTCCATTTATACCCGACGATGTGATGATGGAGATACTGTCACGGATTCCCGTGAAGGCCCTGATGCGGTTTCGGTGTGTTTCTAAGCATTGGAGCTCCTTTGTTTTCCATCCCAATCTGGTGAAATTGCACCTTCAAAGGTCTTCGAAAGACAACCCCATCCTGTACACAATATCCGAGTATGGCGAGTATGATGATGACGCACATTCTTTACACTTGTCCTCCCCGCAACGCTTACTCCAGAACCCACCATCAGTCGTCTACGACCATGCTAACGGTATTCCAATCTTATCCAATTACGACATCGTTGGAGTCTGCAACGGATTGGTGTGTCTGAGTAGAATGCATAATGATCTTGACGAAATTTGGGTCCGATTTTGGAACCCCGCCACCAGGCTCAGTTCCGAGGAGTCACCCTCTTGTTACATAGAATGTGGATGCGCTAAAATGGCCTTTGGCTATGACGCTTCAACCGACACTTATAAGGTGGTGGCGGCAGTGATGAGTGACGCCAAAACTCACAGAATAGAGCTGAGAGTTCTCAATCTTGGAGATGATTGTTGGAGGGAGATTGCAAGGAGCAGTGATGATTTCCCTACGGAAATTAGTCAAACTAAGGGGATGTTTCTGAATGGCACCCTTAACTGGGTGGCTGAACTTGGCACCGGGGAATCCAAATCGTATGTGATTTTTTCCTTTGACGTAGCCAAGGAGACGTACACCTTTTTGACACTGCCTAATGTTGTGGGGGAAGGTTTCTCTGAACTTGGAGTTTTTGGCGGTTGTCTCTGTCTGTATCACATTTACCGCAGGGAATCTTTTACTTTCTGGCAAATGAAGGAATTTGGAGTTCATCAATCTTGGACTCTATTGATGAACATCAATTACAAATATTTTCAGTTTCCCCGCTATCTCATTCCGCGTCCCTTGTGCTTGTCTGCAGATGGGAATATCCTGATCCTGTTTTTGTTGTTCTTGGTTAATATCCAATCCAGGAAACCAAATGGTAGTTACGAGCTGTTGGTGTTCATCTCCATGGCTGCCTCTCTCTCTCTGTCACTGCCATGGAATTTGAAGGCAGCAACAACGCCACTGTCACTGAAACTGAAATGTGGAGCGTTTTCTGAAGGCACTTGTTGTCTTGTTCACAACGACCATGATGATATGCAAGCTCTCTTACAGATCCTTCCATCTGATTTGCATCACAATCTCCTCGGTCAACCTAATCGCTCTCAACTTCTAGAGGTTGTATTGGATTTGGGTCGTTTTCCAGAAGCGCGTTATTTAGGAAAACACGGAGGCCACTATTTAAGGAACACAGAGGTAACTGTGAAGGAGTTGGAATATGCTGAACAAGCTGTTGGAGAGTTTGGGGAGGACAATAGAGCTGGAATTGAGGGTACTTTGCACAGAATATCTGCAATTAGGAGTAGGAATGGTCACATAGTTGGTTTGACTTGTCGAGTCGGGAGAGCAATCACTGGCCAGATTGACATGATTTATGACCTCCTTCAATATGGGAAGAGCATTTTGTTTGTTGGAAGGCCTGGGGTTGGCAAAACTACTGTCATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTGGTGATTGTTGATACCAGCAATGAAATTGGAGGTGATGGCAATATCCCTCATGCAGCTATAGGTGGTGCACGAAGAATGCAGGTGCGTGAGCCATCAATGCAACACAGAGTGATGATTGAGGCAGTAGAAAATCACATGCCTGAGGTGATTGTAGTTGATGAGATTGGCACAGAAATGGAAGCTCATGCTTGCCGATCAATAGCTGAGCGTGGAATCATTCTTATAGGGACTGCTCATGGACAGAAGCTTGAGAATATCATCAAGAATCCTAGCCTTTCTGATCTGATTGGCGGAATAGAAACTGTTACTCTGGGAGATGCAGAAGCCAGAGCGAGAAATTGTCAGAAGACAATTCTTGAGAGGAAAGCACCTCCAACATTTGATTTCTTGATTGAGATGAGAGATAGACACTACTGGCTCACACATCAGACTGACAAAAGCGTAGATATGTTGCTTCGGGGAAAAAGTCCACAGGTTGAGGTAAGAAAAAGAGATGAAAAATGTAAGGTTGTGGTAGAAAAATCTAAAGCATACGATAAATGCCAGTTTTGA 2229 0.4482 MDSEKRMRGSCDAAAVAASVCPFIPDDVMMEILSRIPVKALMRFRCVSKHWSSFVFHPNLVKLHLQRSSKDNPILYTISEYGEYDDDAHSLHLSSPQRLLQNPPSVVYDHANGIPILSNYDIVGVCNGLVCLSRMHNDLDEIWVRFWNPATRLSSEESPSCYIECGCAKMAFGYDASTDTYKVVAAVMSDAKTHRIELRVLNLGDDCWREIARSSDDFPTEISQTKGMFLNGTLNWVAELGTGESKSYVIFSFDVAKETYTFLTLPNVVGEGFSELGVFGGCLCLYHIYRRESFTFWQMKEFGVHQSWTLLMNINYKYFQFPRYLIPRPLCLSADGNILILFLLFLVNIQSRKPNGSYELLVFISMAASLSLSLPWNLKAATTPLSLKLKCGAFSEGTCCLVHNDHDDMQALLQILPSDLHHNLLGQPNRSQLLEVVLDLGRFPEARYLGKHGGHYLRNTEVTVKELEYAEQAVGEFGEDNRAGIEGTLHRISAIRSRNGHIVGLTCRVGRAITGQIDMIYDLLQYGKSILFVGRPGVGKTTVMREIARVLSDELHKRVVIVDTSNEIGGDGNIPHAAIGGARRMQVREPSMQHRVMIEAVENHMPEVIVVDEIGTEMEAHACRSIAERGIILIGTAHGQKLENIIKNPSLSDLIGGIETVTLGDAEARARNCQKTILERKAPPTFDFLIEMRDRHYWLTHQTDKSVDMLLRGKSPQVEVRKRDEKCKVVVEKSKAYDKCQF 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00306 742 Gene3D - 502 711 IPR027417 -
Spst10g00306 742 SUPERFAMILY F-box domain 24 79 IPR036047 GO:0005515
Spst10g00306 742 CDD AAA 515 638 - -
Spst10g00306 742 SMART AAA_5 526 662 IPR003593 GO:0016887
Spst10g00306 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 667 IPR027417 -
Spst10g00306 742 CDD F-box_AtFBW1-like 22 59 - -
Spst10g00306 742 SMART fbox_2 24 64 IPR001810 GO:0005515
Spst10g00306 742 Gene3D - 24 60 - -
Spst10g00306 742 PANTHER KINASE-RELATED 405 724 - -
Spst10g00306 742 Pfam F-box domain 25 60 IPR001810 GO:0005515
Spst10g00306 742 Pfam Sporulation stage III, protein AA 503 655 IPR045735 -
Spst10g00306 742 NCBIfam F-box protein interaction domain 125 323 IPR017451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00306 Spst-Chr10 3067951 3076876 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00306 - - gmx:100817880 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00306 10 3067951 3076876 Spst10g00306 10 3067951 3076876 ECH