Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00183 ATGGACTCCATTCTCGCTTCTTCTCCACTTCAATTTCCCCACCGCCCTCTCTTCACTTCCATTCGCCCCATTCCTATCCGCACACTCATCTTCAACTCCCGTCGAACACCACGAACCCCACTCTCACTCCCTCCCATCACCCTCAATCCACCAATCATTTCTGCCGCCAGCTCCACCGCACTCACACCCTCTCCCAACCACGACGTTTTATTGAAACACCTCGTTCGCGCACTCTTCTGCTTCGCCGTTGGTTTCTCCGCGCTCGGCGCATTCCATGCTCCTCCTCCCGCACTCGCAATTGCTGTTCCCTGGAGTCTATTCAGGAAGACAGGCGCCGAGAAAGAGAAAGAGAGAACTAAGAGTCACAAGTATTCGGACTGCACCGATGGGTTGTTGGAGACGGTGTCGTTTTTGTTGGGAGTCATAGATGGAGCTAGGAAAGGGAATGGTGGCGCGAGCGAGGTCAAGGCGGCGTTGAAGGCCGTGAAATCGAAGAAAATAGAGATGCGGAAAGCGATTGACGGGAGGCTCTACCCGGCGTTGAGGAAGCTGAGGAAAGTAAAGAAGGCGTTGTGGAAACGGTCCGGGGAGATTCTCGGCCAGATATTGAGGGCGACGGGGGAGTACGATAGATTGAAGTCGAAGGCGGTGGCCAATGAGAAGGAGAAGGCAAGGATGAAGGAGTTGGAGGAGACTGTGGGAGGGATGGAGAATGAGTACAATGGGTTGTGGGAGAGAATTGGGGATATCGAGGACCAGATTTCGAGGGAGGAGACTGTGGCGTTGAGTTATGGAGTGAGGGAAATCAATTTCATAGAGAGGGAGTGTGAGCAGCTGGTGGAGAGGTTTAAACAGGAAATTAGACGCAAGGACTTCGAAAGTTTGTCTACTGGATCAGTTACCAGGCTCTCAAAATCTGTCATTCAAAAAGATTTGGAAACTGTGCATAGAAAACAGGCAGAACAAATAATTCTTCCTAGCATTTTAGATGTTGAAGATCTTGGGCCATTCTTTCACCAAGACTCTATTGATTTTGCCCAACGTTTAAAAAGAGTTCTTAAAGATTCCAGGGAGAAGCAAAGGAATTTAGAGGCTCAGATAAGAAAAAAAATGAAAAAGTTTGGCAAGGAAAAGCGCAGTATTATTTACTCACCAGAGGAAGATGTGGTTAAGGGTTTCCCTGAAGTTGAGATGAAGTGGATGTTTGGAAATAAGGAGGTTGTGCTTCCCAAAGCTGTTGGTCTCCATCTGTACCATGGTTGGAAGAAATGGCGGGAAGAAGCTAAGGCAAATTTAAAACAGAATTTAATAAAAGATGCTGAGTTTGGCAGACAATATGTGGCTGAAAGACAGGAACGAATTCTTTTGGACCGAGATAGAGTAGTTTCAAGAACCTGGTACAATGAAGAGAAGAAGAGATGGGAGATGGATCCAGTGGCTGTGCCTTATGCTGTCTCAAAAAAGCTAATAGAGTATGTTCGCATTAGGCATGATTGGGGTGCCATGTATATCACATTAAAGGGGGAGGACAAAGAATTTTATGTAGACATAAAGGTTGTAGCTGAATTTGAAATGCTTTTTGATGATTTGGGGGGATTTGATGGACTGTATATGAAAATGCTTGCCTGTGGTATTCCAACAGCGGTTCATTTAATGTGGATTCCATTATCTGAATTGAGTATCCGCCAACAATTTCTCTTGATATTTAGAGTGTCTCAGGGAATTTTAAGTGGGTTATGGAATACTGGAGTTGTCACAAATGCCAAAAATAGGATCTTTACAGAAATTAAGGATACAACTGATGACATAATGGTGGTGATAGTATTTCCTATTGTGGAATTTTTAATCCCTTACCCGGTGAGGATACAGTTGGGGATGGCTTGGCCAGAGGAAATATATCAGACAGTTGACACCACATGGTACTTGAAATGGCAATCAGAGGCAGAATTGAATTTTAGATCCAGACAATCAACAGATGAGGAGGAAGAAGCGTCATGGTCTTTTTGGTTTTTTGTCAGAGCTGCTATATATGGATTTGTTTTGTTTCACGTGGTCAAGTTTATGAGGAGAAGACTTCCTAGTCTTCTTGGGTTTGGGCCTTTTCGAAGAGATCCGAATATGCAGAAGTTGCGGCGAGTGAAGTATTACATTACTCAAAAATTGAAAAAAATAAAGCAGAGGAGAAAGGATGGCATTGATCCCATAAAGACAGCATTTGAACAAATGAAGAGGGTGAAGAAACCGCCAATACCATTGAAGAACTTTGCTAGCGTTGAGTCCATGAAAGAGGAAATCAATGAAGTTGTGGCATTTTTGCAGAATCCAAGGGCATTCCAAGAAATGGGTGCACGGGCACCTCGGGGAGTTCTTATTGTAGGTGAGAGGGGTACGGGTAAGACATCTCTAGCATTGGCTATCGCAGCTGAGGCTAAGGTGCCTGTTGTTGAAATTAAGGCCCAACAATTGGAGGCTGGGCTGTGGGTTGGACAAAGTGCCTCCAATGTTCGTGAATTGTTTCAGACAGCAAGAGATCTGGCTCCTGTGATAATATTTGTTGAGGATTTTGACCTGTTTGCTGGTGTACGTGGTACATACATTCATACCAAAAATCAAGATCATGAAACTTTCATCAATCAACTGCTCGTTGAACTTGATGGATTTGAGAAACAAGATGGGGTTGTTTTGATGGCTACTACACGAAATCTCAAGCAAATTGACGAGGCCTTGCAGAGGCCAGGTCGCATGGATAGAATATTTCATCTTCAAAGACCGACACAAGCTGAGAGAGAAAAAATGTTGTACTTGGCAGCAAAGGAAACCATGGATGATCAGCTTATAGATTATGTTGACTGGAAAAAGGTTGCTGAGAAGACAGCTCTTTTACGACCTATTGAATTAAAAATTGTTCCAATGGCTTTGGAAGGAAGTGCCTTCCGAAACAAAGTTCTTGACACAGATGAATTGATGGGCTACTGTGGTTTCTTTGCGACTTTCAGTCCAATGATTTCCCCATGGCTACGGAAGACCAAAATTTTCAACAAGTTTAGCAAAGCGATGGTGAATCATCTTGGACTGACATTGACAAAAGAAGATCTGCAGAATGTTGTTGATTTGATGGAACCATATGGCCAAATAAGCAATGGGATAGAGCTTTTGAGCCCTCCACTTGATTGGACAAGGGAAACCAAATTTCCACATGCTGTCTGGGCAGCTGGTCGTGGTCTTACTGCTCTTTTATTACCAAATTTTGATGTGGTTGATAATCTTTGGCTTGAACCTCTATCATGGCAGGGAATTGGATGTACAAAAATCACAAAAGCAAGAAATGAAAGTTCCATCAATGGGAATTCAGAATCAAGATCATATCTTGAAAAGAAGCTTGTATTTTGTTTTGGTTCTTATATTGCATCTCAAATGTTACTTCCTTTTGGGGAAGAAAACTTACTTTCTACTTCTGAGATACAGCAGGCTCAAGAGATAGCTACTCGAATGGTCATTCAGTATGGGTGGGGACCGGATGACAGTCCTGCAATTTATTACCGTAGTAATGCGGTCACGGCATTAAGCATGGGAGATGACCATGAATATGTGATGGCAGCTAAAGTTGAAAAGATGTTCGATTTGGCATATCTCAAAGCAAGAGAAATGCTGCTGAAAAATCGCCCAGTACTAGAAAAAATAGTGGAAGAATTACTTGAGTTTGAAATCTTGACTGGGAAGGATTTAGAAAGAATTATTAAAGATAATGGTGTAATCAGGGAGAAAGAGCCGTTTACACTTGGTGAAGTTCAAGCTAGTGAGACAACATCTGTCAGCTTCCTTGAAAGAGGAAATGCACCAGGAAGTGCTCTTCTAGCATCCTAG 3864 0.4319 MDSILASSPLQFPHRPLFTSIRPIPIRTLIFNSRRTPRTPLSLPPITLNPPIISAASSTALTPSPNHDVLLKHLVRALFCFAVGFSALGAFHAPPPALAIAVPWSLFRKTGAEKEKERTKSHKYSDCTDGLLETVSFLLGVIDGARKGNGGASEVKAALKAVKSKKIEMRKAIDGRLYPALRKLRKVKKALWKRSGEILGQILRATGEYDRLKSKAVANEKEKARMKELEETVGGMENEYNGLWERIGDIEDQISREETVALSYGVREINFIERECEQLVERFKQEIRRKDFESLSTGSVTRLSKSVIQKDLETVHRKQAEQIILPSILDVEDLGPFFHQDSIDFAQRLKRVLKDSREKQRNLEAQIRKKMKKFGKEKRSIIYSPEEDVVKGFPEVEMKWMFGNKEVVLPKAVGLHLYHGWKKWREEAKANLKQNLIKDAEFGRQYVAERQERILLDRDRVVSRTWYNEEKKRWEMDPVAVPYAVSKKLIEYVRIRHDWGAMYITLKGEDKEFYVDIKVVAEFEMLFDDLGGFDGLYMKMLACGIPTAVHLMWIPLSELSIRQQFLLIFRVSQGILSGLWNTGVVTNAKNRIFTEIKDTTDDIMVVIVFPIVEFLIPYPVRIQLGMAWPEEIYQTVDTTWYLKWQSEAELNFRSRQSTDEEEEASWSFWFFVRAAIYGFVLFHVVKFMRRRLPSLLGFGPFRRDPNMQKLRRVKYYITQKLKKIKQRRKDGIDPIKTAFEQMKRVKKPPIPLKNFASVESMKEEINEVVAFLQNPRAFQEMGARAPRGVLIVGERGTGKTSLALAIAAEAKVPVVEIKAQQLEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGTYIHTKNQDHETFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAEREKMLYLAAKETMDDQLIDYVDWKKVAEKTALLRPIELKIVPMALEGSAFRNKVLDTDELMGYCGFFATFSPMISPWLRKTKIFNKFSKAMVNHLGLTLTKEDLQNVVDLMEPYGQISNGIELLSPPLDWTRETKFPHAVWAAGRGLTALLLPNFDVVDNLWLEPLSWQGIGCTKITKARNESSINGNSESRSYLEKKLVFCFGSYIASQMLLPFGEENLLSTSEIQQAQEIATRMVIQYGWGPDDSPAIYYRSNAVTALSMGDDHEYVMAAKVEKMFDLAYLKAREMLLKNRPVLEKIVEELLEFEILTGKDLERIIKDNGVIREKEPFTLGEVQASETTSVSFLERGNAPGSALLAS 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00183 1287 Pfam ATPase family associated with various cellular activities (AAA) 789 922 IPR003959 GO:0005524|GO:0016887
Spst10g00183 1287 Coils Coil 346 373 - -
Spst10g00183 1287 SUPERFAMILY FtsH protease domain-like 1059 1256 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Spst10g00183 1287 FunFam ATP-dependent zinc metalloprotease FtsH 3 1057 1254 - -
Spst10g00183 1287 SMART AAA_5 785 925 IPR003593 GO:0016887
Spst10g00183 1287 Gene3D - 732 942 IPR027417 -
Spst10g00183 1287 Gene3D Peptidase M41 1057 1255 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Spst10g00183 1287 FunFam ATP-dependent zinc metalloprotease FtsH 3 731 942 - -
Spst10g00183 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 957 IPR027417 -
Spst10g00183 1287 PANTHER METALLOPROTEASE M41 FTSH 336 1253 - -
Spst10g00183 1287 Coils Coil 209 239 - -
Spst10g00183 1287 Coils Coil 269 289 - -
Spst10g00183 1287 Pfam Peptidase family M41 1117 1245 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00183 Spst-Chr10 1726656 1752416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00183 752 1246 Miscellaneous Gene Families AT5G53170 28.713 1.27e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00183 - - gmx:100794385 2221.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00183 10 1726656 1752416 Spst10g00183 10 1726656 1752416 ECH