Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08027 ATGAACAAGAGGCCAAGAACCAGCGCCTACAAGGCTGTTCTTGATCTCTCCAATCGAGAACTCGGCGAACTACCTGCCAGGAATTTCCCTCACCGTCTCGGCGCTTCTGAGGATCTTGTCCTTCGACTTGATGTATTCAGGAAGCTGGAAAAGCACAGAGGTTGTGTAAACACTGTCAGCTTCAATGCAGATGGTGACATTTTGGTGTCAGGTTCTGATGACCGGAGGGTTATTCTCTGGGACTGGGAAAGTGGGCGTATTAAGCTGTCTTTCCATTCTGGTCACAGTAACAATGTTTTTCAGGCAAAAATCATGCCTCACTCTGATGATCGAAGCATTGTCACTTGTGCTGCTGATGGACAGGTGAGGCATGCTCAAATTCTTGAACAAGGAGGAGTGGAAACTAAGTTACTGGCCAAGCATCAAGGACGGGCTCATAAGTTGGCTATTGAGCCTGGTAGCCCTCATATATTTTATACCTGTGGCGAAGATGGATTAGTACAGCATTTTGATCTGAGAACTGGGGCTGCAACAGAACTTTTTACATGCCAGCCAATTAAGGATAGATGGAATTACATGCCAGTCATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCAAATCTCTTCGCAGTTGCTGGGTCTGATGAGTATACTCGACTTTATGATATCCGCAGGTATAAGTGGGATGGATCAACTGATTTTGGTCAACCAACCAACTTCTTTTGCCCTCCACACTTGATTGGTGACGAACGAGTGGGAATAACAGGCCTGGCCTTTTCTGAACAAAGGGAGCTTCTTGTGTCCTACAATGACGAGTTTATTTACCTTTTTACACAAGATATGGGTTTGGGACCGAACCCTGTTCCTGGGTCTCCTATATCTATGAATAGTGATGCAAGTGAAATGGGAGGTAGTCATGGATCTGCGGCATCTCCATCAAACATGGATGCTGATGAGAAAATCACCCCGCAAGTTTATAAGGGACACAGGAATTGTGAGACAGTGAAGGGTGTTAACTTTTGTGGACCTAATTGTGAGTATGTAGTGAGTGGGTCAGACTGTGGTCGGATTTTCATTTGGAAAAAGAAAGGTGGTCAGCTTGTTCGTGTAATGGAAGCGGATAAGCATGTTGTGAACTGCATTGAGTCTCATCCTCATACGATGGTTCTTGCAAGCAGTGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTCGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGGTATGA 1266 0.4502 MNKRPRTSAYKAVLDLSNRELGELPARNFPHRLGASEDLVLRLDVFRKLEKHRGCVNTVSFNADGDILVSGSDDRRVILWDWESGRIKLSFHSGHSNNVFQAKIMPHSDDRSIVTCAADGQVRHAQILEQGGVETKLLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGAATELFTCQPIKDRWNYMPVIHLNAIAIDPRNPNLFAVAGSDEYTRLYDIRRYKWDGSTDFGQPTNFFCPPHLIGDERVGITGLAFSEQRELLVSYNDEFIYLFTQDMGLGPNPVPGSPISMNSDASEMGGSHGSAASPSNMDADEKITPQVYKGHRNCETVKGVNFCGPNCEYVVSGSDCGRIFIWKKKGGQLVRVMEADKHVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQV. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08027 421 MobiDBLite consensus disorder prediction 289 318 - -
Seca8g08027 421 MobiDBLite consensus disorder prediction 292 318 - -
Seca8g08027 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Seca8g08027 421 SMART WD40_4 84 126 IPR001680 GO:0005515
Seca8g08027 421 SMART WD40_4 189 224 IPR001680 GO:0005515
Seca8g08027 421 SMART WD40_4 321 363 IPR001680 GO:0005515
Seca8g08027 421 SMART WD40_4 241 280 IPR001680 GO:0005515
Seca8g08027 421 SMART WD40_4 131 171 IPR001680 GO:0005515
Seca8g08027 421 SMART WD40_4 42 81 IPR001680 GO:0005515
Seca8g08027 421 SMART WD40_4 366 405 IPR001680 GO:0005515
Seca8g08027 421 Gene3D - 38 407 IPR015943 GO:0005515
Seca8g08027 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 86 - -
Seca8g08027 421 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 13 420 IPR045151 -
Seca8g08027 421 Pfam WD domain, G-beta repeat 47 81 IPR001680 GO:0005515
Seca8g08027 421 Pfam WD domain, G-beta repeat 326 363 IPR001680 GO:0005515
Seca8g08027 421 SUPERFAMILY WD40 repeat-like 41 404 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08027 Seca-Chr8 177815259 177817747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08027 K11804 - gmx:100794236 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08027 8 177815259 177817747 Seca8g08027 8 177815259 177817747 ECH