Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g08020 ATGGCGGCGACTCAATCGTGGCAGCCACAGGAGCAAGGGTTCAAAGAGATCTGCGGCCTCCTTGAGCAGCAGATTTCGCATTCTTCTTCGGCTGACAAGTCTCAGATTTGGCAACACCTTCAGCGCTACTCTCACCTTCCCGACTTCAACAATTATCTCGCCTTCATCTTTTCCCGTGCTGAGGGAAAATCAGTGGAGGTTCGGCAAGCTGCAGGTTTATATCTGAAGAATAACCTTAGAAGCACATATAGTTCTATGCAGCCTGCATACCAACAATATGTGAAATCAGAGTTGCTGCCATGTCTTGGTGCAGCGGATAAGCACATAAGGTCTACGGCAGGAACTATTATTAGTGTTGTTGTTCAATTAGGAGGAATTTTGGGATGGCCTGAGTTGTTGCAAGCCCTTGTAAATTGCTTGGACAGTAATGATCTAAATCACATGGAAGGTGCAATGGATGCGTTATCCAAGATTTGTGAGGATATTCCCCAATATCTTGACTGTGATGTACCGGGGTTAGCAGAGCGCCCTATTAACATATTTCTTCCCAGATTATTTCGGTTTTTCCAATCACCTCATGCTTCACTAAGAAAGCTATCATTGGGTTCTGTAAATCAATTCATTATGTTAATGCCTTCTGCCTTATATGTCTCCATGGATCAATATCTTCAAGGTCTGTTTATTCTTGCAAACGACCCTATTGCAGAAGTGCGGAAGTTGGTTTGTGGTGCATTCGTTCAGCTAATTGAAGTCCGTCCATCTTTCTTGGAGCCACATCTAAGGAATGTGATTGAATACATGTTACAAGTCAACCAGGACAAAGATGATGAAGTGGCCCTTGAAGCCTGTGAATTTTGGTCTGCATATTGTGATGCTCAACTTCCACCAGAAAACTTGAGAGAATTCTTGCCTCGTCTTATTCCAGTATTGTTGTCAAACATGGCTTATGCAGATGATGATGAATCACTTATTGAAGCTGAGGAAGAGGGTTCTCAACCTGACCGAGATCAGGATCTTAAACCTCGATTCCATGTATCAAGATTCCATGGATCAGACGAAGCAGAAGATGATGACGATGATGTCGTCAATATATGGAATTTACGAAAATGCAGTGCTGCTGCTCTAGATATTCTCTCAAATGTGTTTGGAGATGAGATCCTTCCGACTTTGATGCCTATTGTTGAGGCCAAGTTGTCAGCTGCCGGAGATGATTCTTGGAAAGAAAGGGAAGCTGCTGTCTTGGCTCTTGGAGCCATAGGCGAGGGTTGCATCAATGGTCTTTATCCTCATCTGTCAGAGATTGTTGCATTTCTTATCCCTCTTCTTGATGATAAGTTTCCTCTGATACGGAGTATTTCATGCTGGACACTATCTCGGTTTAGCAAATTTATTGTTCAGGGTACTGGGCATCCTAAAGGATATGAACAATTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGCGTGCAAGAGGCTGCTTGTTCAGCTTTTGCAACACTGGAAGAGGAAGCTGCTGAAGAGTTAGCACCACGCCTGGAAATCATATTAAAGCACCTGATGATTGCATTTGGGAAATATCAGAGACGAAACCTCAGAATTGTATATGATGCTATTGGAACTCTAGCTGAAGCTGTTGGAGGAGAGCTGAATCAGCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTGCAAATTCAGACAAGGATCTCTTTCCACTCCTGGAATGCTTTACATCTATAGCACATGCATTGGGCATTGGATTCACTCAATTTGCTGAACCTGTATTTAGGAGGTGCATAAATATAATCCAGATCCAACAATTTGCTAAGGCTGATCCTGCTGCAGCTGGTGTTCAATATGACAAGGAGTTCATTGTATGCTCTCTTGATCTGCTTTCTGGACTAGCAGAGGGTCTTGGCAGTGGAATAGAGAGTTTGGTCTCACAATGTTCTTTGAGGGACCTACTTCTGCATTGTTGTATGGATGATGCTCCCGATGTTCGACAAAGCGCCTTTGCCTTACTTGGTGACCTTGCACGAGTGTGCCCGGTTCATTTGCACCCTCGTCTGTCTGAGTTTCTTGAGGCTGCCGCCAAACAACTGGAAATTTCTAAGGTGAAGGAGGCTATTTCAGTAGCAAATAATGCATGCTGGGCAATTGGAGAATTAGCAGTTAAGGTTCGTCAAGAAATTTCTCCCATTGTTTTGACAGTAATTTCATGCTTGGTCCCAATTCTTCAGCATGCAGAGGGACTCAACAAGTCACTTATAGAAAATAGTGCAATAACACTGGGGAGGCTTGCGTGGGTTTGTCCAGACCTTGTATCCCCACATATGGAGCATTTCATGCAATCTTGGTGCACTGCTCTGTCAATGATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCTATGGTATGCTCCTCCTTTTCACACAATGAACTTTTTACACGTCCACGGCTCAAGTAA 2517 0.4327 MAATQSWQPQEQGFKEICGLLEQQISHSSSADKSQIWQHLQRYSHLPDFNNYLAFIFSRAEGKSVEVRQAAGLYLKNNLRSTYSSMQPAYQQYVKSELLPCLGAADKHIRSTAGTIISVVVQLGGILGWPELLQALVNCLDSNDLNHMEGAMDALSKICEDIPQYLDCDVPGLAERPINIFLPRLFRFFQSPHASLRKLSLGSVNQFIMLMPSALYVSMDQYLQGLFILANDPIAEVRKLVCGAFVQLIEVRPSFLEPHLRNVIEYMLQVNQDKDDEVALEACEFWSAYCDAQLPPENLREFLPRLIPVLLSNMAYADDDESLIEAEEEGSQPDRDQDLKPRFHVSRFHGSDEAEDDDDDVVNIWNLRKCSAAALDILSNVFGDEILPTLMPIVEAKLSAAGDDSWKEREAAVLALGAIGEGCINGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQGTGHPKGYEQFDNVLMGLLRRILDDNKRVQEAACSAFATLEEEAAEELAPRLEIILKHLMIAFGKYQRRNLRIVYDAIGTLAEAVGGELNQPVYLDILMPPLIEKWQQLANSDKDLFPLLECFTSIAHALGIGFTQFAEPVFRRCINIIQIQQFAKADPAAAGVQYDKEFIVCSLDLLSGLAEGLGSGIESLVSQCSLRDLLLHCCMDDAPDVRQSAFALLGDLARVCPVHLHPRLSEFLEAAAKQLEISKVKEAISVANNACWAIGELAVKVRQEISPIVLTVISCLVPILQHAEGLNKSLIENSAITLGRLAWVCPDLVSPHMEHFMQSWCTALSMIRDDVEKEDAFRGLCAMVCSSFSHNELFTRPRLK. 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g08020 838 ProSiteProfiles Importin-beta N-terminal domain profile. 36 104 IPR001494 GO:0006886|GO:0031267
Seca8g08020 838 Pfam HEAT repeat 666 694 IPR000357 GO:0005515
Seca8g08020 838 SUPERFAMILY ARM repeat 7 824 IPR016024 -
Seca8g08020 838 Pfam HEAT-like repeat 406 459 - -
Seca8g08020 838 PANTHER IMPORTIN BETA 20 824 IPR040122 GO:0006606
Seca8g08020 838 Pfam Importin-beta N-terminal domain 37 103 IPR001494 GO:0006886|GO:0031267
Seca8g08020 838 FunFam Transportin-1 4 829 - -
Seca8g08020 838 Gene3D - 4 828 IPR011989 -
Seca8g08020 838 SMART IBN_N_2 36 104 IPR001494 GO:0006886|GO:0031267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g08020 Seca-Chr8 177764517 177783416 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g08020 K18752 - gmx:100792702 1531.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g08020 8 177764517 177783416 Seca8g08020 8 177764517 177783416 ECH