Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07988 ATGGCCAAGCCAGTATCCATTGAGGTATGGAACCCAAGTGGGAAATACAGAGTTGTTAGCACAAAACCAATGCCCGGAACTCGTTGGATCAATCTTCTCATCCAGCAAGATTGTCGCCTTGAAATATGTACCGAGAAGAAAACTATACTGTCAGTTGAAGACATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATAGGACAGCTGACTGAAGATTGGGGAGAAGAGTTGTTCTCTGCGTTGAGCAGAGCAGGAGGCAAAGTTTTCAGTAACATGGCGGTTGGTTATAATAATGTGGATGTTGATGCTGCAACCAAGCATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTCACAGAGACTACAGCAGAGTTAGCAGCTTCCCTGTCTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCTGGATTATATGATGGATGGCTGCCTCATCTATTTGTTGGGAACTTGCTCAAGGGACAAACTGTTGGTGTTATTGGAGCTGGCCGTATTGGATCAGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATTTACTATGACCTCTACCAGGCTACACGACTAGAAAAGTTTGTCACAGCTTATGCTGCATTCTTGAAAGCAAGTGGTGAAACACCGGTTACTTGGAAAAGGGCAGCATCCATGGATGAGGTCCTCCAGGAGGCAGATATAATTAGTCTTCATCCTGTCTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGGCTCACTAAGATGAAGAAGGAAGCAATTCTTGTGAACTGCAGTAGAGGGCCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAGACAGAACCCAATGTTTCGTGTAGGCCTTGATGTGTTTGAGGTAATTGAACATTTTTAA 918 0.4368 MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSRAGGKVFSNMAVGYNNVDVDAATKHGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYAAFLKASGETPVTWKRAASMDEVLQEADIISLHPVLDKTTYHLVNKERLTKMKKEAILVNCSRGPVIDEVALVEHLRQNPMFRVGLDVFEVIEHF. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07988 305 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 300 IPR006140 GO:0051287
Seca8g07988 305 Gene3D - 18 117 - -
Seca8g07988 305 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 18 300 - -
Seca8g07988 305 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 34 129 IPR006139 GO:0016616|GO:0051287
Seca8g07988 305 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 300 IPR036291 -
Seca8g07988 305 Gene3D - 118 300 - -
Seca8g07988 305 FunFam Glycerate dehydrogenase HPR, peroxisomal 118 304 - -
Seca8g07988 305 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 17 156 - -
Seca8g07988 305 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 168 196 IPR029752 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07988 Seca-Chr8 177491106 177495092 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07988 K15893 - gmx:547640 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07988 8 177491106 177495092 Seca8g07988 8 177491106 177495092 ECH