Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07963 ATGTTTCTCACAAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCTCCTGAAGGCCGTTTGTTTCAGGTTGAATATGCCATCGAAGCCATCAAGCTGGGATCAACTGCAATTGGGTTGAAGACGAAAGAGGGGGTTGTCCTTGCTGTTGAAAAGCGTATAACTTCACCGCTGCTGGAGCCTAGCAGTGTGGAGAAAATTATGGAAATTGATGAGCATATAGGTTGTGCGATGAGTGGATTGATTGCTGATGCTCGAACACTTGTTGAGCATGCGCGAGTGGAAACTCAGAATCATAGGTTCTCATATGGTGAACCAATGACTGTAGAGTCCACAACTCAAGCTCTTTGTGATCTAGCCTTGCGTTTCGGTGAAGGTGATGAAGAGTCCATGTCTCGACCATTTGGAGTGTCTCTACTCATAGCTGGCCATGATGAGAATGGACCTAGTTTATATTACACTGATCCATCTGGTACATTTTGGCAATGCAATGCAAAAGCTATTGGTTCAGGATCGGAAGGTGCAGACAGTTCTCTGCAAGAACAATACAACAAGGACCTAACTCTTCAAGAAGCCGAGACTATTGCTTTATCCATTCTGAAGCAAGTCATGGAAGAGAAGGTCACTCCCAACAACGTTGACATTGCCAAGGTGTCTCCAACATATCATCTTTATACCCCATCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA 714 0.4496 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPSEVEAVISRL. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07963 237 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 234 IPR029055 -
Seca8g07963 237 ProSiteProfiles Proteasome alpha-type subunit profile. 23 234 IPR023332 -
Seca8g07963 237 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 237 IPR029055 -
Seca8g07963 237 CDD proteasome_alpha_type_5 8 218 IPR033812 GO:0019773|GO:0043161
Seca8g07963 237 SMART Proteasome_A_N_2 8 30 IPR000426 GO:0006511|GO:0019773
Seca8g07963 237 FunFam Proteasome subunit alpha type 1 237 - -
Seca8g07963 237 ProSitePatterns Proteasome alpha-type subunits signature. 8 30 IPR000426 GO:0006511|GO:0019773
Seca8g07963 237 Pfam Proteasome subunit A N-terminal signature 8 30 IPR000426 GO:0006511|GO:0019773
Seca8g07963 237 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 13 234 - -
Seca8g07963 237 Pfam Proteasome subunit 31 218 IPR001353 GO:0005839|GO:0051603
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07963 Seca-Chr8 177261579 177265973 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07963 K02729 - aew:130787882 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07963 8 177261579 177265973 Seca8g07963 8 177261579 177265973 ECH