Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07820 ATGCTCCCCACTCCGAAACCTTCGTCCATCCCCAAAACCCTAAAACCCTCAATTCACCCTCCGTTTCTCGCCATGAAGGACCGCCCCTCGCTGTCCTCCTATGGCGCCATTTACGTTCCGCCGCACCACCGCCTTCGCTCCATCGTCACTTCCGCCAATCACAACAGCTCTCACGCTCCCGCTTCCGTCAAGCTTCGCGAAAACCATAAACCCACCGCCACTACTCTGCAAACCCCGTTACCGGAGCAACTTCCCAACAAGAGGAACTCGCGCTACGTTTCTGCTTATGACGACGGCGTTTCCGAGGAAGGCTCCGATCGTGATTTTGAGGTTCCTCCACTATCGAGTGGTTCCCCCAATGATAACATTGACGAGTGGAAGCGGAAATTAGCCATGCTTTTAAATGACAAGAGTAAGCAAGAATTAATCTCGAGGGAGAAAAAGGATAGGCGTGATTTTGAGCAAATAGCAGTTTTGGCAAGCAGAATGGGGTTATATAGTCACATGTATGCCAAGGTTGTTGTCTTCAGTAAGGTGCCACTTCCAAACTACAGATATGATTTGGATGATCGACGGCCCCAGAGGGAGGTCAGCATGCCTATCACGTTGTTTAGGCAAGTGGATGCATATTTTAGGGAACACCTTAGGCAAAAGTCCAGGATGAACAAAAGCTTTTCAGACTTGTCATTTCCAAGATCAAGCAGTAATGGAAGTATTGGAACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACTAGCATCCAGTAAGGCTCTTGCGGAGAAGGTTCTTTGGCAGAGGAGTTTACAAATGCGCAATGAGCAGCAAGCTTGGCAGGAATCTCCTGAAGGAAGAACAATGCTAGAATTTCGTAGCAGTCTCCCTGCTTATAAAGAGAAAGAAGCAATATTATCACTCATATCAAGGAACCAGGTAGTTATCATTTCAGGCGAAACAGGTTGTGGCAAGACAACACAAATTCCACAATTTATTTTAGAATCTGAGATAGAATCAGTTCGTGGAGCTGCTTGTAATATTATATGTACACAGCCAAGACGCATTTCAGCCATGTCTGTTTCTGAAAGGGTTGCTTCTGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGATATAAAGTTCGATTGGAGGGTATGAAAGGGAGAGACACCCATCTTCTCTTTTGCACCACAGGCATCTTATTAAGAAGATTACTTGCTGATAGAAACTTGAATGGTGTAACTCATGTTATTGTGGATGAAATTCATGAACGTGGGATGAATGAAGATTTTATGCTCATTGTCCTTAAAGATCTCCTTCCCCGTCGACCTGAACTGAAACTGATTTTGATGAGTGCTACCCTAGATGCAGAGCTCTTCTCTTCATACTTTAACGGGGCTCCAATAATGAAAATTCCGGGCTTTACATACCCCGTTAGAACTCATTTTTTGGAGAACGTTCTTGAAATGACGGGCTATAGATTGACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAACAGGCCCCAAGAAAGAGGAAAAGCCAAATTGCTTCTGCTGTAGAGGATGCAATTGGAGCTGCTGATTTCAAAGATTACAGCCCACATACACAGGAGTCTTTGGCATGTTGGAATCCTGACTGCATTGGTTTTAGTCTCATAGAATATATCTTATGCAATATTTGTGAGAAAGAAAAGCCTGGTGCTGTCTTGGTTTTCATGACTGGATGGGATGATATAAGCTCTCTGAAAGAGAAGCTCCTGACACACACTGTCTTGGGAGATCCAAATCGTGTTTTGTTGCTTACATGTCATGGCTCAATGGCTAGTTCAGAGCAGAGGTTAATATTTGAAGAGCCTGAAGATGGAGTAAGAAAAATAGTTCTAGCAACAAATATTGCTGAAACGAGTATCACAATAAATGATGTAGTTTTTGTTCTGGACTGTGGAAAAGCAAAAGAATCATCATATGATGCACTGAATAACACGCCTTGTTTGCTTCCTACATGGATTTCTAAGGTTTCTGCTCAACAAAGAAGAGGAAGAGCTGGTCGTGTTCAACCAGGAGAGTGTTACCATCTCTATCCTAGATGTGTGTATGATGCTTTTGCAGAGTATCAGTTGCCAGAAATTTTGCGAACACCATTGCAATCTCTCTGTTTACAAATCAAAAGTTTAAGACTTGGAAGTATATCTGAGTTTTTGTCTAGGGCTTTGCAGTCTCCCGAGACACTTGCGGTACAAAATGCAGTTGAATATTTAAAAATAATTGGTGCATTGGATGAGAATGAGAATCTTACTATTCTAGGGCGCTATCTAGCAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTCATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTCGTTGCGGGACTTAGTGTGAGAGATCCTTTTCTAACACCACTGGATAAAAAAGATCTTGCAGATGCAGCAAAAGCTCAATTCTCCGGTCAATACAGTGACCACCTAGCACTTGTAAGTGCTTATGAGGGTTGGAAGGATGCTGAGATAGACCAGAGTGGGTATGAATACTGCTGGAAAAATTTTCTTTCATCACAGTCCATGAAAGCTATTGATGCTCTTCGGGGGGAGTTTATATGCCTGCTCAAGGAGATTGGATTAGTTGATAGCAACATAACCAGCTGCAACGCATGGAGCTATGATGTGAATCTTATCCGAGCAGTTATTTGCTATGGTCTATATCCTGGAATTTGTTCTGTTGTGGTATGTTTTTTTTTATGA 2793 0.4275 MLPTPKPSSIPKTLKPSIHPPFLAMKDRPSLSSYGAIYVPPHHRLRSIVTSANHNSSHAPASVKLRENHKPTATTLQTPLPEQLPNKRNSRYVSAYDDGVSEEGSDRDFEVPPLSSGSPNDNIDEWKRKLAMLLNDKSKQELISREKKDRRDFEQIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVSMPITLFRQVDAYFREHLRQKSRMNKSFSDLSFPRSSSNGSIGTDEGLFEQPEPLASSKALAEKVLWQRSLQMRNEQQAWQESPEGRTMLEFRSSLPAYKEKEAILSLISRNQVVIISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRNLNGVTHVIVDEIHERGMNEDFMLIVLKDLLPRRPELKLILMSATLDAELFSSYFNGAPIMKIPGFTYPVRTHFLENVLEMTGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASAVEDAIGAADFKDYSPHTQESLACWNPDCIGFSLIEYILCNICEKEKPGAVLVFMTGWDDISSLKEKLLTHTVLGDPNRVLLLTCHGSMASSEQRLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKESSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPETLAVQNAVEYLKIIGALDENENLTILGRYLAMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLADAAKAQFSGQYSDHLALVSAYEGWKDAEIDQSGYEYCWKNFLSSQSMKAIDALRGEFICLLKEIGLVDSNITSCNAWSYDVNLIRAVICYGLYPGICSVVVCFFL. 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07820 930 MobiDBLite consensus disorder prediction 98 122 - -
Seca8g07820 930 Gene3D - 556 710 IPR027417 -
Seca8g07820 930 MobiDBLite consensus disorder prediction 226 242 - -
Seca8g07820 930 Pfam Helicase conserved C-terminal domain 559 690 IPR001650 -
Seca8g07820 930 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 303 470 IPR014001 -
Seca8g07820 930 Pfam DEAD/DEAH box helicase 301 453 IPR011545 GO:0003676|GO:0005524
Seca8g07820 930 FunFam DExH-box ATP-dependent RNA helicase DExH3 247 471 - -
Seca8g07820 930 Gene3D - 252 471 IPR027417 -
Seca8g07820 930 SMART helicmild6 582 691 IPR001650 -
Seca8g07820 930 SMART ultradead3 291 484 IPR014001 -
Seca8g07820 930 MobiDBLite consensus disorder prediction 1 26 - -
Seca8g07820 930 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 557 731 IPR001650 -
Seca8g07820 930 FunFam DExH-box ATP-dependent RNA helicase DExH3 553 709 - -
Seca8g07820 930 SMART ha2_5 753 843 IPR007502 GO:0004386
Seca8g07820 930 CDD SF2_C_RHA 537 699 - -
Seca8g07820 930 PANTHER ATP-DEPENDENT RNA HELICASE 233 919 - -
Seca8g07820 930 CDD DEXHc_RHA-like 309 469 - -
Seca8g07820 930 MobiDBLite consensus disorder prediction 226 246 - -
Seca8g07820 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 869 IPR027417 -
Seca8g07820 930 Gene3D - 733 845 - -
Seca8g07820 930 Pfam Helicase associated domain (HA2) 754 827 IPR007502 GO:0004386
Seca8g07820 930 FunFam Putative ATP-dependent RNA helicase DHX36 733 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07820 Seca-Chr8 175569280 175585483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07820 K14442 - jre:109007771 1456.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07820 8 175569280 175585483 Seca8g07820 8 175569280 175585483 ECH