Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07816 ATGGGATTGGTGACGACCACTGTTCCTATTCCTCAATTCGGTTTGCTCCCAAACCACCTCACCTCCAACCACTCCTCCTCCGCCTTCACCTTCCCTCTCTCCAGAACCAGGAGGAATAATAGATTCGTTTGCTTCGCTGTTGATGACGACCTCAGACAGAAACAGCAGCAGCAACAGTTGAGTACTGGTGCAACTGGCCTTGAAGAAAGGCCTGTGGAAAATACAGATCTGCTTGATAGTGCAACTGAAGAAACTCTGGAAAATTTTCAGCAAGATGGGGAAAGAAGTGCTATCTATGATTTTCTTTATCCTAGTAAAGAGCTTCTTCCTGATGATAAAGAAATGAGCATATTTGATCATCTTGAAGAACTGCGACAGAGAATCTTTGTATCGGTTCTAGCAGTTGGAGCGAGCATTTTGGGATGCTTTGCATTTTCAAAAGAACTGGTAATGATTCTGGAAGGTCCTGTTAAATCACAGGGTGTAAGATTTCTTCAGCTAGCTCCTGGTGAATTTTTCTTCACAACTTTAAAGGTGTCTGGATACTGTGGCCTCCTCTTGGGAAGTCCCATCATCCTCTATGAAATCATAGCCTTTGTACTTCCTGGTCTAACAAAAGCTGAAAGAAGGTTTCTAGGGCCAATTGTTTTAGGCTCATCCGTTCTTTTCTATGCCGGAATAACCTTCTCCTACTTAGTTCTGACACCTGCAGCATTAAATTTCTTTGTTAATTACGCTGAGGGTGCTGTTGAATCATTGTGGTCTATTGATCAATACTTTGAGTTTGTTCTGGTGCTTATGTTCAGTACAGGCTTGTCTTTCCAGGTACCTGTTATACAATTTCTATTGGGACAAGTTGGATTGGTGTCTGGAGATCAGATGCTATCAGTTTGGAGATATGTTGTGGTTGGCGCAGTAGTGGCAGCTGCTGTAGTTACACCATCAACTGATCCTCTCACTCAAGTTCTTCTAGCGGCACCCCTATTGGGTTTATACCTAGGTGGCGCATGGATGGTCAAGCTCACGGGACGGTGA 1035 0.4377 MGLVTTTVPIPQFGLLPNHLTSNHSSSAFTFPLSRTRRNNRFVCFAVDDDLRQKQQQQQLSTGATGLEERPVENTDLLDSATEETLENFQQDGERSAIYDFLYPSKELLPDDKEMSIFDHLEELRQRIFVSVLAVGASILGCFAFSKELVMILEGPVKSQGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPIILYEIIAFVLPGLTKAERRFLGPIVLGSSVLFYAGITFSYLVLTPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQVGLVSGDQMLSVWRYVVVGAVVAAAVVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLTGR. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07816 344 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC 96 344 IPR002033 GO:0016020
Seca8g07816 344 NCBIfam twin-arginine translocase subunit TatC 117 332 IPR002033 GO:0016020
Seca8g07816 344 ProSitePatterns TatC family signature. 259 278 IPR019820 -
Seca8g07816 344 PRINTS Bacterial Sec-independent translocation TatC protein family signature 259 287 IPR002033 GO:0016020
Seca8g07816 344 PRINTS Bacterial Sec-independent translocation TatC protein family signature 190 208 IPR002033 GO:0016020
Seca8g07816 344 PRINTS Bacterial Sec-independent translocation TatC protein family signature 116 143 IPR002033 GO:0016020
Seca8g07816 344 PRINTS Bacterial Sec-independent translocation TatC protein family signature 208 234 IPR002033 GO:0016020
Seca8g07816 344 Pfam Sec-independent protein translocase protein (TatC) 119 327 IPR002033 GO:0016020
Seca8g07816 344 Hamap Sec-independent protein translocase protein TatC [tatC]. 112 344 IPR002033 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07816 Seca-Chr8 175491221 175494502 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07816 K03118 - gmx:100801670 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07816 8 175491221 175494502 Seca8g07816 8 175491221 175494502 ECH