Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07800 ATGGCCTCGTCGCCGTCGCCCTCCGCCGCGGCCAGCACCAACATCATGCTCGCCATCTTCGAGAAGAAGACAAACTCTGTCGATCTCTATCGCCCTCTCCGCAACTACGTTGCCTTCCACTACTCCGAACGCGAGGCCCAAAACGTCGAAGATGATCTCCAAACCCTAAAGCAACTCCGCACCGACGTGGAGCGCAACTCCGATCCATCCCTCCCGGCCCGCCGCGACCTCTTCCAAACTTACTTCAAAGCCCTCTGCCAAGTTGAGACCCGATTCCCAATCTCACCCGACCCGGACCACGTCAACACCCTCACCTTCGTCTGGTTCGACGCCTTCAAGCCCAAACAGAAGGCTTCTCAGCAGAACATCCACCTCGAGAAGGCCTCAGTCCTCTTCAATTTGGGCGCTGTTTACAGCCAGATTGGCTTGTCCTACGACCGCAACACCGTTGACGGCCGCCGTCAGGCTTCGCACGCATTCATCGCCGCCGCTGGCTCCTTCGCTTTCCTCAGGGACAATGCCTCCATGAAGGCCTCCATTGGTAATTCCACCACCCTCGATTTGTCCGTCGAGTGCGCCGGAATGTTGGAGAAGCTCATGCTCGCTCAGGCTCAGGAATGCGTCTTTGAGAACACCATCGCTAAAGGGAGTACCCCTGGTGTTTGTGCCAAGATCTCTAGGCAGGTTGGAGTGTATTATGAGGAAGCTTTAGCGGCACTGAATGTCTCGCCTTTAAGCCAGCATTTTGATAAGTCCTGGATAGTTCACGTGCAGTTAAAGGCAGCTCTGTTCTATGCAGAAGCTTGTTATAGGTATGGATTAGAGCTACATGAAAAAGAAGAAATAGCAGAGGAGATTGCACGGTTGAGGAGTGCTGTTAGTGTGCTAACCGAGGCTAAGAAAAACTCAAAGGGTGCTGCAGCACAAATTCTAGATGCGATTAGCAAGTTAGAGGCCAATATTAACCGAAACCTGGAAAGGGCTGTCAAGGAGAATGATAGAGTTTACCTCATGAGAGTTCCTTCTCCCAGTTCCTTACCACCTCTTCCGACATTTTCTATGGTGAAGCCAATGGCGATGTATGAGGTGCTAGATGCAAGCAAAGAGAAGATGTTTGCAAGTCTTGTTCCTGACAGCAGTGCAAAGGCCCTCTCCAGGTACACTGAAATGGTAGATGACATTATAAGAACACAGGCTGAAAAGTTACAGCAAGCTAGCGAGCTAACCCGAGTTAGGCTTAAGGAAATGGAGCTGCCAGATTCTATTCTTGCTTTGGAAGGAAATTTTACACTGCCAACAAATCTCAAAGAAGACGTGGAGGCTGTGCAGATCAGTGGGGGCCCTGCTGGTTTGGAAGGAGAGTTGCAGCAACTTAGGGACCTAAGGAGGGTGAATCAAGAATTGCTGGTCCAGACTGAGGAGTTGTTGCAGAAGGAAGCAAGAGAAGATGCTCAATTTAGAAGCCAATTTGGCACAAGATGGACTAGGCCTCAATCAAGCACTTTGACAAAGAACTTGCAGGATAGGCTAAATAGGTTTGCAGGCAACTTGAAGCAGGCTGCTGAAAGTGATGCTAGGATTGAGCGTTCAGTTAGAGAACATTCAGCGCTCATGTCAATCCTTGATGCCCATCCGATTGAATCTGCACTTCCAAGCTTGGCTAGGCCAATTATGTCTTTTGATCAAAATGAAGATGCTGTTGTGGGGTCTCTCAAGCAAAGCTTGAGGCAGCTAGAAACTCTAGGAGCTCAAAGGGCTGGTCTTGAAGACATGCTTAAAGAGATGAAAAGAAAGGATGATATATTACCCAAGTTGATGACATCCACCGGTTCTTATGAGGATCTTTTCAAGAAGGAGGTAGCAAAATATAACCATATTTGTGAAGAAATAGCTCAAAATATTGAGGCACAAGAGCAATTGTTACTACAGATTCAGGCTCAAAATGATGAATTTTCTGCCATCTTCAATCTTGAAGACTACAAAGCTTCACGTGAAAAATCCTACAAGCAGATTGAAGCTGCCATAGCAAAGTTTCGAGAAATAAAGGACAACATCAATGAAGGGTTAAAGTTCTATGTTACTTTGCAGGATGCAATCAATAATGTAAAGCAGCAGAGCAATGACTTTGTAATGACAAGGAACATCCAGTGCAGAGAAATGATTGAAGATGTTCAAAGACAAGTCGCTGGTCTGAGTTTCCAGGACAAAAACACAGGTTCTTTTAACAGCAACAACTACCCTTCAGTGGGAAACCAAAATCAAAGATCCAATACACAAACAGATCCTCCTCGTCCCCAAGCGCCTTATTATCAACCTGAGCAGCCACCAATTTCTGGCTATGCTCATCATCCTCCCCCATATGGTCCTCCACATCATCAGCCACCACCTCCATACCAAATTCCACCAACATCAGCTGCCCCATACCCTCCCCCTCAGGTCCATCAGCAGCCACCGACAAACCATGAGTATGGTCAACCTGCATATCCTGGATGGCGTGGTCCATACTACAATGCACACGCACAACAACCTGCTTCTGTCCCTCGGCCTCCTTATACCATCCCATCTCAATATCCTCCACCTCACCAAGGTGGCTACTTTAAGCAGCAATAG 2610 0.4785 MASSPSPSAAASTNIMLAIFEKKTNSVDLYRPLRNYVAFHYSEREAQNVEDDLQTLKQLRTDVERNSDPSLPARRDLFQTYFKALCQVETRFPISPDPDHVNTLTFVWFDAFKPKQKASQQNIHLEKASVLFNLGAVYSQIGLSYDRNTVDGRRQASHAFIAAAGSFAFLRDNASMKASIGNSTTLDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGVYYEEALAALNVSPLSQHFDKSWIVHVQLKAALFYAEACYRYGLELHEKEEIAEEIARLRSAVSVLTEAKKNSKGAAAQILDAISKLEANINRNLERAVKENDRVYLMRVPSPSSLPPLPTFSMVKPMAMYEVLDASKEKMFASLVPDSSAKALSRYTEMVDDIIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTNLKEDVEAVQISGGPAGLEGELQQLRDLRRVNQELLVQTEELLQKEAREDAQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDARIERSVREHSALMSILDAHPIESALPSLARPIMSFDQNEDAVVGSLKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYEDLFKKEVAKYNHICEEIAQNIEAQEQLLLQIQAQNDEFSAIFNLEDYKASREKSYKQIEAAIAKFREIKDNINEGLKFYVTLQDAINNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKNTGSFNSNNYPSVGNQNQRSNTQTDPPRPQAPYYQPEQPPISGYAHHPPPYGPPHHQPPPPYQIPPTSAAPYPPPQVHQQPPTNHEYGQPAYPGWRGPYYNAHAQQPASVPRPPYTIPSQYPPPHQGGYFKQQ. 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07800 869 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Seca8g07800 869 Pfam BRO1-like domain 16 394 IPR004328 -
Seca8g07800 869 Gene3D alix/aip1 like domains 10 376 IPR038499 -
Seca8g07800 869 MobiDBLite consensus disorder prediction 765 816 - -
Seca8g07800 869 CDD BRO1_Alix_like_1 16 371 - -
Seca8g07800 869 Coils Coil 279 299 - -
Seca8g07800 869 CDD V_Alix_like_1 377 713 - -
Seca8g07800 869 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Seca8g07800 869 Gene3D alix/aip1 like domains 423 704 - -
Seca8g07800 869 MobiDBLite consensus disorder prediction 735 764 - -
Seca8g07800 869 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Seca8g07800 869 PANTHER PCD6 INTERACTING PROTEIN-RELATED 15 862 - -
Seca8g07800 869 SMART BRO1_2 15 399 IPR004328 -
Seca8g07800 869 Coils Coil 578 598 - -
Seca8g07800 869 Coils Coil 627 647 - -
Seca8g07800 869 MobiDBLite consensus disorder prediction 735 869 - -
Seca8g07800 869 Coils Coil 451 478 - -
Seca8g07800 869 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07800 Seca-Chr8 175279364 175286891 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07800 K12200 - gmx:100795465 1430.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07800 8 175279364 175286891 Seca8g07800 8 175279364 175286891 ECH