Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07796 ATGAGCAATCCAGATGAAGAAGAAGAACCTCTATCCAGAGCTGCAACAGCCACTGAAGACCTCTACCATCTCCGTGACACTTATTTCCCACCCAACCCCAATGACAGAATCTCCAAGTTGCAACACGAATCCGATCTCGTTCTCAAACTCCTCGATTCCATTCCTCCAGAACAAAGAAAATCACTTATGCAACGTGCAACATTTGAATATCTTAGAGGAAAGGTGTTGGATGTATTTCCTGACTATAGGAAAGATGCCGAGGATCATCTATCAAAAGCTGTTAAGTTAAACCCATCTCTTGCAGATGCTTGGCTATGTTTAGGTAACTGCATTTGGAAGAAAGGAGATTTATCTGCTGCAAAGAACTGCCTTAGTCTTGCATTAAACAAGGGTCCTAACAAAAAGATTCTTTGTCAATTATCAATGCTTAAAAGAAAAATGTCTCAAGGTGCAGAGAATCAGGCAGAACTTGTCGATGAAAGCATTCAACATGCCAAGGAAGCAATCACTTTGGATGTCAAGGATGGGAACTCTTGGTTCATCACCAACATTAATAACCCTGTCAATCTTTGCACTACCCTGCTGACTTCCTCTTCCTCAACGGAGATGTCGCTGGCATCCCCTTCCTGGCGATCAAGTTGGCGTTGTTATATTATAGGACTGGTTTTTCAAAGAACCACTGATCTAGTTTCTAAGCTCAATCAATCTTCAATTTCTGATGCTGGAGACCGAAAATTGTTCTTGGATTTGAACCTCACAAGGTCCTCAACCACATGGGAGGTTTCGAAGCTGAACCTTGCAGTGGTGCTGCTGAACCTGTGCAAGAGCATGTCCTTTGATAATCTTGGTAATGCATACCTTACAAGTTTTTTTGTCACTGGAGCTTGGGATCATACCAAACTTTCGCACTCTTTAAAAGCTTATCAAAATGCTGAGAAAGATGAAAGAATGAAGTCCAATCCAGATCTATATTTTAATAATGCCACTGTTAACAAATATCTAGAGAACTACCATAGGGCCCTTAGTGGATTTGAGGCTGCTGCTTTAAAAGATCCAGGTCTCAATGCTGCAGAGGAGGTTCAGAAGATAGTCAATTTACTTGACAAGGTGGACAATCTTTTGAGGGGACATGTAAGAGCTAAGCGAATGGCATCTTGGGCATCATCATTGACGGCTGTTAATTTGAAATCGTCATACAAAAGAGTTACCATAGACCTTCTGTCTGAGGGTCTGAATAGAGCTCTAGCAGTAGAGGGGAAGGTGCTTTTCTTTGTTAAGAGTGAGAGTGTTGCTCCCTTATACTATTTGCTTTGTGATCCAAATCAGACTTGCTTTGTTCTCTCAATTTATGGTGTACGTAATGATGTGATTAAAGAAGGGGATCAGCTAACATTACTTGACCCTAATTTTCATGATGTTGATTTGTACTGGAAGGAGAAGCTTCTTCTTCCATCATCCAGAAACTCAGTTGCTCTGAATGAATGCACAAAGACTGAACGACCTTTTAACAGCAAGATGGAGAATGAATTTGCTAAGGCATTTTCTGAATCATACGCAATGAACGGAGGAGAGGGCCCTCACAGTTATGCCGTAAACTCAAACATTCAGAGAACAGGAATTGAAGCTGCCAAAAGCTTAATCCAGGGGGCAATATCCAACAGATTTGACCCAAAGACTATTTCTGCCAACCCAATTCGCATTGCAGATTTGGGGTGCTCCACAGGGCCTAATACCTTCATAGCAATTCAATGCATAGTAGAAGCAATAGAGCTCCAATACCACTCACATGGTCTTGCTCTCCCAGAGTTCCAAGTTTTCTTCAATGACCAGCTTTCAAATGATTTCAACACACACTTTAAAATGATTCCTTCCAACAGAAAGTACTTTGCAGCTGGGGTTCCTGGCTCTTTCTATGGAAGATTATTTCCAAAGGAGAGCCTTCATGTAATTCACTCATCTGCATCACTAAACTGGATCTCCAAGGTGCCTAAGGAGATTACAGACAGAACTTGTGCTGCTTGGAACAAGGGGAGAATTCATTGCACACATGCTCCCAAGGAAGTTGTAGATGCCTACAAAAATCAGTATCAGAAAGACATGGAAACTTTCCTGCATGCCAGAGCACAAGAGCTCGTGGGCGATGGACTAATGGCACTTCAAATTGCTGCTGCACATGATTTAACTTCTGATTCAGATATGTACTCTGGAAAAAATTTTGAACTTCTTGGAACTTGCCTAGTGGACATGGCCAATGAGGGAAAAGTCAATGAAGAAAAAGTGGACTCTTTCAATTTGCCCATCTTTTTCTCACCCATTAAGGATCTGATGAAAATTCTTGAAAGCAATGAAGATTTCAGCATCGAGCAACTGGAAACAATAGATACTAATACCCTGTCCAACCCTGTTGATGTTCACAAGTATGTTTCCCTCCACAGGGCTGCGCTGGAAGGACTAATTGAGAACCATTTTGGAGATGAAATTATTGATGAGCTCTTCGATCGCTATACAAAGAAAGTGATGGAATTCCGAGATATAATGGATATACAAAAGCTAAAACTAGTTGGACTCTTTGTTCTTCTTAGGCGCAAGTCGCAGCATGAATAG 2604 0.4136 MSNPDEEEEPLSRAATATEDLYHLRDTYFPPNPNDRISKLQHESDLVLKLLDSIPPEQRKSLMQRATFEYLRGKVLDVFPDYRKDAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLSAAKNCLSLALNKGPNKKILCQLSMLKRKMSQGAENQAELVDESIQHAKEAITLDVKDGNSWFITNINNPVNLCTTLLTSSSSTEMSLASPSWRSSWRCYIIGLVFQRTTDLVSKLNQSSISDAGDRKLFLDLNLTRSSTTWEVSKLNLAVVLLNLCKSMSFDNLGNAYLTSFFVTGAWDHTKLSHSLKAYQNAEKDERMKSNPDLYFNNATVNKYLENYHRALSGFEAAALKDPGLNAAEEVQKIVNLLDKVDNLLRGHVRAKRMASWASSLTAVNLKSSYKRVTIDLLSEGLNRALAVEGKVLFFVKSESVAPLYYLLCDPNQTCFVLSIYGVRNDVIKEGDQLTLLDPNFHDVDLYWKEKLLLPSSRNSVALNECTKTERPFNSKMENEFAKAFSESYAMNGGEGPHSYAVNSNIQRTGIEAAKSLIQGAISNRFDPKTISANPIRIADLGCSTGPNTFIAIQCIVEAIELQYHSHGLALPEFQVFFNDQLSNDFNTHFKMIPSNRKYFAAGVPGSFYGRLFPKESLHVIHSSASLNWISKVPKEITDRTCAAWNKGRIHCTHAPKEVVDAYKNQYQKDMETFLHARAQELVGDGLMALQIAAAHDLTSDSDMYSGKNFELLGTCLVDMANEGKVNEEKVDSFNLPIFFSPIKDLMKILESNEDFSIEQLETIDTNTLSNPVDVHKYVSLHRAALEGLIENHFGDEIIDELFDRYTKKVMEFRDIMDIQKLKLVGLFVLLRRKSQHE. 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07796 867 SMART tpr_5 321 354 IPR019734 GO:0005515
Seca8g07796 867 SMART tpr_5 101 134 IPR019734 GO:0005515
Seca8g07796 867 Pfam Tetratricopeptide repeat protein 5 OB fold domain 399 480 IPR032076 -
Seca8g07796 867 SUPERFAMILY TPR-like 84 369 IPR011990 GO:0005515
Seca8g07796 867 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 516 863 IPR029063 -
Seca8g07796 867 Gene3D Tetratricopeptide repeat domain 254 377 IPR011990 GO:0005515
Seca8g07796 867 Gene3D Tetratricopeptide repeat domain 3 217 IPR011990 GO:0005515
Seca8g07796 867 Gene3D - 519 841 IPR042086 -
Seca8g07796 867 Gene3D Vaccinia Virus protein VP39 532 796 IPR029063 -
Seca8g07796 867 Gene3D - 378 504 IPR038645 -
Seca8g07796 867 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 519 840 IPR005299 GO:0008168
Seca8g07796 867 Pfam SAM dependent carboxyl methyltransferase 559 862 IPR005299 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07796 Seca-Chr8 175232306 175246924 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07796 - K24928 cam:101502648 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07796 8 175232306 175246924 Seca8g07796 8 175232306 175246924 ECH