Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07785 ATGGCTATTCCTTTTCCCCGTTTCATTGCCTCCGAGAAAGCAGCCATGGAAGCTGGCCTTCTTGTTCCTTCTTCTCCGTCCCAACCCCCTGTGATTCTCACCCAAGACGATTTGAAGAAAATCGCCGCCTACAAGGCCGTCGAATACGTCGAATCCGGCATGGTTCTGGGCCTTGGAACCGGGTCAACGGCGAAGCACGCCGTGGACCGAATCGGAGAGCTTCTTCGCCAGGGAAAGCTCAAGGACATCACAGGAGTACCCACTTCGAAGAAGACACACGAGCAGGCCCTCTCACTGGGGATTCCCTTGTCAGATCTCGATTCCCACCCTGTTATTGATCTCGCCATTGATGGCGCCGATGAGGTTGATCCTTATTTGAACTTGGTGAAGGGTCGTGGTGGTTCCCTTTTGAGAGAGAAAATGGTGGAGAGTGCGTGCAAGAAGTTTGTGGTCATTGTGGATGAGTCCAAATTGGTGAATTATTTGGGAGGGAGTGGTTTGGCTATGCCTGTTGAGGTTATTCAGTTTTGTTGGAAGTTCACTGCTGCTAGGCTGCAAAAACTGTTTGAGGATTCTGGTTGCGTTGCCAAGCTCAGGACTTTTGGTGAGAAGGATGAACCCTTTGTCACAGACAATGGGAACTTTATTGTGGATTTGTATTTTAAGGAGAGTATTGGTGATTTGAAGGCTGCAAGCGATGCTATTCTGCAGATTGCAGGTGTTGTGGAGCACGGGATGTTCCTGGACATGGCCACCACTGTTATTGTTGCAGGTGAACTTGGGCTAACGGTGAAAAATAAGTAG 804 0.495 MAIPFPRFIASEKAAMEAGLLVPSSPSQPPVILTQDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKDITGVPTSKKTHEQALSLGIPLSDLDSHPVIDLAIDGADEVDPYLNLVKGRGGSLLREKMVESACKKFVVIVDESKLVNYLGGSGLAMPVEVIQFCWKFTAARLQKLFEDSGCVAKLRTFGEKDEPFVTDNGNFIVDLYFKESIGDLKAASDAILQIAGVVEHGMFLDMATTVIVAGELGLTVKNK. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07785 267 SUPERFAMILY NagB/RpiA/CoA transferase-like 34 218 IPR037171 -
Seca8g07785 267 Gene3D - 161 245 - -
Seca8g07785 267 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 167 248 - -
Seca8g07785 267 Gene3D - 38 259 - -
Seca8g07785 267 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 85 259 IPR004788 GO:0004751|GO:0009052
Seca8g07785 267 PANTHER RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED 23 266 - -
Seca8g07785 267 CDD RPI_A 38 258 IPR004788 GO:0004751|GO:0009052
Seca8g07785 267 FunFam Ribose-5-phosphate isomerase A 38 173 - -
Seca8g07785 267 NCBIfam ribose 5-phosphate isomerase A 38 261 IPR004788 GO:0004751|GO:0009052
Seca8g07785 267 Hamap Ribose-5-phosphate isomerase A [rpiA]. 35 265 IPR020672 GO:0004751|GO:0009052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07785 Seca-Chr8 175123683 175124486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07785 K01807 - gmx:100795150 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07785 8 175123683 175124486 Seca8g07785 8 175123683 175124486 ECH